Variant report

Variant	rs34230187
Chromosome Location	chr15:40665854-40665855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11630119	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4575496	0.82[ASN][1000 genomes]
rs61654142	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62017981	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62017982	0.82[ASN][1000 genomes]
rs62017984	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62017985	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62018001	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62018002	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72733420	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40660800-40674800	Weak transcription	Esophagus	oesophagus
2	chr15:40661000-40669600	Weak transcription	HSMM	muscle
3	chr15:40661000-40671400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:40661200-40674800	Weak transcription	Fetal Brain Male	brain
5	chr15:40661600-40674600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:40663200-40674800	Weak transcription	Brain Germinal Matrix	brain
7	chr15:40663800-40674200	Weak transcription	Right Ventricle	heart
8	chr15:40665200-40671400	Weak transcription	Spleen	Spleen
9	chr15:40665200-40674800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:40665200-40674800	Weak transcription	Fetal Brain Female	brain
11	chr15:40665400-40669600	Weak transcription	HSMMtube	muscle
12	chr15:40665400-40674800	Weak transcription	Fetal Lung	lung
13	chr15:40665600-40669600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:40665600-40669800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:40665600-40671600	Weak transcription	Osteobl	bone
16	chr15:40665800-40669600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:40665800-40671400	Weak transcription	Placenta	Placenta
18	chr15:40665800-40671400	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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