Variant report

Variant	rs62018001
Chromosome Location	chr15:40668575-40668576
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000128944	Chromatin interaction
ENSG00000259714	Chromatin interaction
ENSG00000259368	Chromatin interaction
ENSG00000140323	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11630119	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34230187	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61654142	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62017981	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62017984	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62017985	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62018002	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6492944	0.83[ASN][1000 genomes]
rs7176592	0.83[ASN][1000 genomes]
rs7177949	0.83[ASN][1000 genomes]
rs72733420	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72733427	0.83[ASN][1000 genomes]
rs72733428	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62018001	CCDC32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40660800-40674800	Weak transcription	Esophagus	oesophagus
2	chr15:40661000-40669600	Weak transcription	HSMM	muscle
3	chr15:40661000-40671400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:40661200-40674800	Weak transcription	Fetal Brain Male	brain
5	chr15:40661600-40674600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:40663200-40674800	Weak transcription	Brain Germinal Matrix	brain
7	chr15:40663800-40674200	Weak transcription	Right Ventricle	heart
8	chr15:40665200-40671400	Weak transcription	Spleen	Spleen
9	chr15:40665200-40674800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:40665200-40674800	Weak transcription	Fetal Brain Female	brain
11	chr15:40665400-40669600	Weak transcription	HSMMtube	muscle
12	chr15:40665400-40674800	Weak transcription	Fetal Lung	lung
13	chr15:40665600-40669600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:40665600-40669800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:40665600-40671600	Weak transcription	Osteobl	bone
16	chr15:40665800-40669600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:40665800-40671400	Weak transcription	Placenta	Placenta
18	chr15:40665800-40671400	Weak transcription	NHDF-Ad	bronchial
19	chr15:40668000-40674600	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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