Variant report

Variant	rs61654142
Chromosome Location	chr15:40653103-40653104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40651634..40653250-chr15:40659195..40661061,2	MCF-7	breast:
2	chr15:40649702..40654099-chr15:40655704..40659247,4	K562	blood:

Variant related genes	Relation type
ENSG00000140323	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11630119	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34230187	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4575496	0.82[ASN][1000 genomes]
rs62017981	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62017982	0.82[ASN][1000 genomes]
rs62017984	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62017985	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62018001	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62018002	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72733420	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61654142	CCDC32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40651000-40657200	Weak transcription	Psoas Muscle	Psoas
2	chr15:40651200-40653200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:40651200-40653400	Enhancers	HMEC	breast
4	chr15:40651200-40656400	Weak transcription	K562	blood
5	chr15:40651200-40659200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:40651200-40659200	Weak transcription	Esophagus	oesophagus
7	chr15:40651200-40659200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:40651200-40659400	Weak transcription	Thymus	Thymus
9	chr15:40651400-40654400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:40651400-40654600	Weak transcription	Primary T cells from cord blood	blood
11	chr15:40651400-40656000	Weak transcription	Stomach Mucosa	stomach
12	chr15:40651400-40656200	Weak transcription	Fetal Heart	heart
13	chr15:40651400-40656600	Weak transcription	Right Ventricle	heart
14	chr15:40651400-40657400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:40651400-40657600	Weak transcription	Right Atrium	heart
16	chr15:40651400-40657800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr15:40651400-40657800	Weak transcription	Brain Substantia Nigra	brain
18	chr15:40651400-40657800	Weak transcription	Pancreas	Pancrea
19	chr15:40651400-40658200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr15:40651400-40658200	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:40651400-40658400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:40651400-40658400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:40651400-40658800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:40651400-40658800	Weak transcription	Gastric	stomach
25	chr15:40651400-40659000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr15:40651400-40659200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:40651400-40659200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:40651400-40659200	Weak transcription	Spleen	Spleen
29	chr15:40651600-40654600	Enhancers	Fetal Brain Male	brain
30	chr15:40651600-40656400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:40651600-40657000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:40651600-40658600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr15:40651600-40658600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:40651600-40658800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr15:40651600-40658800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:40651600-40659000	Weak transcription	Primary B cells from cord blood	blood
37	chr15:40651600-40659600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:40651800-40657600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:40651800-40658000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:40651800-40658800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:40651800-40658800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr15:40652000-40656000	Weak transcription	Brain Anterior Caudate	brain
43	chr15:40652000-40657600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:40652000-40658000	Weak transcription	Brain Angular Gyrus	brain
45	chr15:40652400-40653400	Enhancers	NHEK	skin
46	chr15:40652800-40653800	Weak transcription	Fetal Brain Female	brain
47	chr15:40653000-40653200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:40653000-40656800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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