Variant report

Variant	rs34232618
Chromosome Location	chr3:51578802-51578803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:51571099..51575370-chr3:51575946..51579805,7	K562	blood:
2	chr3:51553731..51555381-chr3:51577069..51579615,2	K562	blood:
3	chr3:51577582..51579319-chr3:51581495..51584196,2	K562	blood:

Variant related genes	Relation type
ENSG00000164080	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34466320	1.00[AMR][1000 genomes]
rs35307667	1.00[AMR][1000 genomes]
rs35504866	1.00[AMR][1000 genomes]
rs36030849	1.00[AMR][1000 genomes]
rs71329050	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51573800-51583200	Weak transcription	Aorta	Aorta
2	chr3:51573800-51594000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:51574000-51580600	Weak transcription	K562	blood
4	chr3:51574000-51583800	Weak transcription	Colonic Mucosa	Colon
5	chr3:51574000-51586800	Weak transcription	Brain Substantia Nigra	brain
6	chr3:51574000-51590800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:51574000-51593800	Weak transcription	Right Ventricle	heart
8	chr3:51574000-51597000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:51574000-51600600	Weak transcription	Gastric	stomach
10	chr3:51574000-51615400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:51574000-51624800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:51574200-51616400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:51574400-51583800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:51574400-51593200	Weak transcription	Brain Angular Gyrus	brain
15	chr3:51574400-51613800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:51574600-51579400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:51574600-51580400	Weak transcription	Fetal Heart	heart
18	chr3:51574600-51582200	Weak transcription	HUVEC	blood vessel
19	chr3:51574600-51583000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:51574600-51583000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:51574600-51584000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr3:51574600-51586000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:51574600-51587400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr3:51574600-51590800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:51574600-51593200	Weak transcription	Brain Anterior Caudate	brain
26	chr3:51574600-51593200	Weak transcription	NHLF	lung
27	chr3:51574600-51593400	Weak transcription	HSMMtube	muscle
28	chr3:51574600-51593800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:51574600-51593800	Weak transcription	Left Ventricle	heart
30	chr3:51574600-51594400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:51574600-51600800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr3:51574600-51601800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr3:51574600-51624600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:51574800-51579000	Strong transcription	Osteobl	bone
35	chr3:51574800-51581400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr3:51574800-51591000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:51574800-51597600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:51574800-51624800	Weak transcription	NH-A	brain
39	chr3:51575000-51583200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:51575000-51584000	Weak transcription	Lung	lung
41	chr3:51575000-51587400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr3:51575000-51597400	Weak transcription	Small Intestine	intestine
43	chr3:51575200-51587600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr3:51575200-51615600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:51575400-51579000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:51575400-51579200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:51575400-51582800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:51575600-51582600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr3:51575600-51585000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:51575600-51587400	Weak transcription	Muscle Satellite Cultured Cells	--

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