Variant report

Variant	rs71329050
Chromosome Location	chr3:51343795-51343796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34232618	1.00[AMR][1000 genomes]
rs34466320	1.00[AMR][1000 genomes]
rs35307667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35504866	1.00[AMR][1000 genomes]
rs36030849	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51315400-51350000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:51339800-51347200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:51340000-51370800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:51340200-51343800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:51341600-51347200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:51341600-51372000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:51342000-51348000	Weak transcription	Brain Angular Gyrus	brain
8	chr3:51342200-51347200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:51342200-51349400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:51342200-51352400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:51342200-51353600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:51342200-51355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:51343400-51343800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:51343600-51345600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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