Variant report

Variant	rs34233048
Chromosome Location	chr17:37936443-37936444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37930340..37932811-chr17:37934515..37937245,3	MCF-7	breast:
2	chr17:37913349..37915064-chr17:37935924..37938078,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12945567	0.81[AFR][1000 genomes]
rs12952222	0.81[AFR][1000 genomes]
rs34869948	0.81[AFR][1000 genomes]
rs34872040	0.81[AFR][1000 genomes]
rs35226954	0.81[AFR][1000 genomes]
rs35932672	0.81[AFR][1000 genomes]
rs67599922	0.81[AFR][1000 genomes]
rs73302153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37925600-37938400	Weak transcription	Pancreas	Pancrea
2	chr17:37934400-37937400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr17:37934600-37938200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:37934600-37939600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr17:37934600-37939800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:37934600-37940000	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr17:37934600-37940000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:37934600-37940000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr17:37934600-37940600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:37934800-37937600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr17:37934800-37938400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr17:37934800-37939600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr17:37934800-37939600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr17:37935000-37937800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr17:37935000-37939200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr17:37935000-37940000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr17:37935200-37937200	Weak transcription	Primary T cells from cord blood	blood
18	chr17:37935200-37938200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr17:37935200-37939000	Genic enhancers	Fetal Thymus	thymus
20	chr17:37935400-37937200	Weak transcription	Thymus	Thymus
21	chr17:37936000-37938600	Enhancers	Placenta	Placenta
22	chr17:37936000-37939200	Genic enhancers	Primary B cells from cord blood	blood
23	chr17:37936000-37940000	Genic enhancers	GM12878-XiMat	blood
24	chr17:37936200-37937200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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