Variant report

Variant	rs73302153
Chromosome Location	chr17:37952439-37952440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12945567	0.81[AFR][1000 genomes]
rs12952222	0.81[AFR][1000 genomes]
rs34233048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34869948	0.81[AFR][1000 genomes]
rs34872040	0.81[AFR][1000 genomes]
rs35226954	0.81[AFR][1000 genomes]
rs35932672	0.81[AFR][1000 genomes]
rs67599922	0.81[AFR][1000 genomes]
rs9941391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37939000-37961800	Weak transcription	Spleen	Spleen
2	chr17:37947800-37953400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr17:37948400-37955400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr17:37948400-37956800	Weak transcription	Small Intestine	intestine
5	chr17:37949800-37952600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:37949800-37952800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr17:37950000-37952600	Enhancers	Fetal Thymus	thymus
8	chr17:37950000-37957000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:37950000-37957200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:37950000-37959400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr17:37950400-37956800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr17:37950600-37952800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr17:37950600-37955400	Enhancers	Primary B cells from cord blood	blood
14	chr17:37950800-37956000	Enhancers	Primary T cells from cord blood	blood
15	chr17:37951000-37952800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr17:37951600-37955200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr17:37951600-37956200	Weak transcription	Dnd41	blood
18	chr17:37951600-37969800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr17:37951800-37955200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr17:37951800-37955200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr17:37952000-37955200	Weak transcription	Thymus	Thymus
22	chr17:37952200-37953200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr17:37952400-37956800	Genic enhancers	GM12878-XiMat	blood
24	chr17:37952400-37959400	Genic enhancers	Primary B cells from peripheral blood	blood

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