Variant report

Variant	rs67599922
Chromosome Location	chr17:37940726-37940727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37939870..37942689-chr17:37949107..37950989,2	MCF-7	breast:
2	chr17:37934439..37938793-chr17:37938988..37943375,4	K562	blood:
3	chr17:37819866..37822108-chr17:37939920..37942163,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161405	Chromatin interaction
ENSG00000173991	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12943460	0.82[AFR][1000 genomes]
rs12945567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12952222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34145888	1.00[AMR][1000 genomes]
rs34233048	0.81[AFR][1000 genomes]
rs34406947	1.00[AMR][1000 genomes]
rs34715089	1.00[AMR][1000 genomes]
rs34869948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34872040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34894549	1.00[AMR][1000 genomes]
rs35226954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35708591	1.00[AMR][1000 genomes]
rs35802901	1.00[AMR][1000 genomes]
rs35932672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5644	1.00[AMR][1000 genomes]
rs57074971	1.00[AMR][1000 genomes]
rs58627150	1.00[AMR][1000 genomes]
rs59016861	1.00[AMR][1000 genomes]
rs59294054	1.00[AMR][1000 genomes]
rs66639406	1.00[AMR][1000 genomes]
rs66788250	1.00[AMR][1000 genomes]
rs67919571	1.00[AMR][1000 genomes]
rs73294102	1.00[AMR][1000 genomes]
rs73302113	1.00[AMR][1000 genomes]
rs73302117	1.00[AMR][1000 genomes]
rs73302153	0.81[AFR][1000 genomes]
rs73308310	1.00[AMR][1000 genomes]
rs73308323	1.00[AMR][1000 genomes]
rs73308329	1.00[AMR][1000 genomes]
rs73308333	1.00[AMR][1000 genomes]
rs9941391	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37938800-37942400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr17:37939000-37941600	Weak transcription	Fetal Thymus	thymus
3	chr17:37939000-37943200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr17:37939000-37944400	Weak transcription	Thymus	Thymus
5	chr17:37939000-37961800	Weak transcription	Spleen	Spleen
6	chr17:37939600-37940800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr17:37939600-37941200	Weak transcription	Primary T cells from cord blood	blood
8	chr17:37939600-37941200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:37939600-37941200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr17:37939600-37943400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr17:37939800-37941000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr17:37939800-37942400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:37939800-37943400	Weak transcription	NHEK	skin
14	chr17:37939800-37943800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr17:37939800-37944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr17:37939800-37944000	Weak transcription	HMEC	breast
17	chr17:37940000-37940800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:37940000-37941000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr17:37940000-37941000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr17:37940000-37941200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr17:37940000-37948200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr17:37940200-37941000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr17:37940200-37943400	Weak transcription	Placenta	Placenta
24	chr17:37940400-37941400	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr17:37940400-37941600	Strong transcription	Primary B cells from cord blood	blood
26	chr17:37940400-37944000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr17:37940600-37941000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr17:37940600-37941000	Weak transcription	GM12878-XiMat	blood
29	chr17:37940600-37941400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr17:37940600-37943200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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