Variant report

Variant	rs73302113
Chromosome Location	chr17:37927978-37927979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37925962..37928812-chr17:37930496..37932656,3	K562	blood:
2	chr17:37926557..37928473-chr17:37928969..37931505,2	K562	blood:
3	chr17:37919667..37922479-chr17:37925308..37929040,3	K562	blood:
4	chr17:37924711..37926315-chr17:37927219..37929986,2	MCF-7	breast:
5	chr17:37927328..37929448-chr17:38082417..38083917,2	MCF-7	breast:
6	chr17:37908791..37912830-chr17:37925750..37930091,5	K562	blood:

Variant related genes	Relation type
ENSG00000264198	Chromatin interaction
ENSG00000172057	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12945567	1.00[AMR][1000 genomes]
rs12952222	1.00[AMR][1000 genomes]
rs34145888	1.00[AMR][1000 genomes]
rs34406947	1.00[AMR][1000 genomes]
rs34715089	1.00[AMR][1000 genomes]
rs34869948	1.00[AMR][1000 genomes]
rs34872040	1.00[AMR][1000 genomes]
rs34894549	1.00[AMR][1000 genomes]
rs35226954	1.00[AMR][1000 genomes]
rs35708591	1.00[AMR][1000 genomes]
rs35802901	1.00[AMR][1000 genomes]
rs35932672	1.00[AMR][1000 genomes]
rs5644	1.00[AMR][1000 genomes]
rs57074971	1.00[AMR][1000 genomes]
rs57870574	0.89[AFR][1000 genomes]
rs58627150	1.00[AMR][1000 genomes]
rs59016861	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59294054	1.00[AMR][1000 genomes]
rs66639406	1.00[AMR][1000 genomes]
rs66788250	1.00[AMR][1000 genomes]
rs67599922	1.00[AMR][1000 genomes]
rs67919571	1.00[AMR][1000 genomes]
rs73294102	1.00[AMR][1000 genomes]
rs73302117	1.00[AMR][1000 genomes]
rs73308310	1.00[AMR][1000 genomes]
rs73308323	1.00[AMR][1000 genomes]
rs73308329	1.00[AMR][1000 genomes]
rs73308333	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37912000-37930400	Weak transcription	Esophagus	oesophagus
2	chr17:37918400-37929400	Weak transcription	Colonic Mucosa	Colon
3	chr17:37920000-37930000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:37920800-37931000	Genic enhancers	Primary B cells from peripheral blood	blood
5	chr17:37922600-37928400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr17:37923000-37928600	Genic enhancers	Primary B cells from cord blood	blood
7	chr17:37923200-37929200	Weak transcription	Spleen	Spleen
8	chr17:37924200-37928600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr17:37924400-37929000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
10	chr17:37924600-37929600	Enhancers	Duodenum Mucosa	Duodenum
11	chr17:37925400-37929600	Enhancers	Dnd41	blood
12	chr17:37925600-37928800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr17:37925600-37938400	Weak transcription	Pancreas	Pancrea
14	chr17:37925800-37928200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr17:37926200-37929400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr17:37926400-37928800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr17:37926400-37929400	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr17:37926600-37928800	Enhancers	Primary T cells from cord blood	blood
19	chr17:37926800-37928400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:37927000-37928600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr17:37927200-37928400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr17:37927200-37930400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr17:37927400-37928400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr17:37927400-37930400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr17:37927400-37931000	Genic enhancers	Fetal Thymus	thymus
26	chr17:37927600-37928200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr17:37927600-37928200	Enhancers	Thymus	Thymus
28	chr17:37927600-37928400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr17:37927600-37929400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr17:37927600-37929400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr17:37927800-37928000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood

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