Variant report

Variant	rs73302117
Chromosome Location	chr17:37930381-37930382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37930340..37932811-chr17:37934515..37937245,3	MCF-7	breast:
2	chr17:37926557..37928473-chr17:37928969..37931505,2	K562	blood:
3	chr17:37928224..37930881-chr17:37931679..37935792,4	K562	blood:

Variant related genes	Relation type
ENSG00000161405	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12945567	1.00[AMR][1000 genomes]
rs12952222	1.00[AMR][1000 genomes]
rs34145888	1.00[AMR][1000 genomes]
rs34406947	1.00[AMR][1000 genomes]
rs34715089	1.00[AMR][1000 genomes]
rs34869948	1.00[AMR][1000 genomes]
rs34872040	1.00[AMR][1000 genomes]
rs34894549	1.00[AMR][1000 genomes]
rs35226954	1.00[AMR][1000 genomes]
rs35708591	1.00[AMR][1000 genomes]
rs35802901	1.00[AMR][1000 genomes]
rs35932672	1.00[AMR][1000 genomes]
rs5644	1.00[AMR][1000 genomes]
rs57074971	1.00[AMR][1000 genomes]
rs58627150	1.00[AMR][1000 genomes]
rs59016861	1.00[AMR][1000 genomes]
rs59294054	1.00[AMR][1000 genomes]
rs66639406	1.00[AMR][1000 genomes]
rs66788250	1.00[AMR][1000 genomes]
rs67599922	1.00[AMR][1000 genomes]
rs67919571	1.00[AMR][1000 genomes]
rs73294102	1.00[AMR][1000 genomes]
rs73302113	1.00[AMR][1000 genomes]
rs73308310	1.00[AMR][1000 genomes]
rs73308323	1.00[AMR][1000 genomes]
rs73308329	1.00[AMR][1000 genomes]
rs73308333	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37912000-37930400	Weak transcription	Esophagus	oesophagus
2	chr17:37920800-37931000	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr17:37925600-37938400	Weak transcription	Pancreas	Pancrea
4	chr17:37927200-37930400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:37927400-37930400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr17:37927400-37931000	Genic enhancers	Fetal Thymus	thymus
7	chr17:37928000-37931000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:37928400-37930400	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr17:37928400-37930600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:37928800-37930600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr17:37929000-37930400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:37929400-37930400	Enhancers	Primary hematopoietic stem cells	blood
13	chr17:37929400-37930800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr17:37929400-37931200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
15	chr17:37929400-37931400	Genic enhancers	Primary B cells from cord blood	blood
16	chr17:37929400-37932000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr17:37929600-37930400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:37929600-37930400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr17:37929600-37930400	Weak transcription	Colonic Mucosa	Colon
20	chr17:37929600-37931000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr17:37929600-37931000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr17:37929800-37930400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr17:37929800-37930600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr17:37930000-37930400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr17:37930000-37930800	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
26	chr17:37930000-37931800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr17:37930200-37930400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr17:37930200-37930400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:37930200-37930400	Flanking Active TSS	Thymus	Thymus
30	chr17:37930200-37930800	Genic enhancers	Primary T cells from cord blood	blood
31	chr17:37930200-37930800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr17:37930200-37931800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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