Variant report

Variant	rs35708591
Chromosome Location	chr17:37920077-37920078
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MIEN1-1	chr17:37913974-37920089	ENSG00000264198.1

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12943460	0.94[AFR][1000 genomes]
rs12945567	1.00[AMR][1000 genomes]
rs12952222	1.00[AMR][1000 genomes]
rs34145888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34406947	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34715089	1.00[AMR][1000 genomes]
rs34869948	1.00[AMR][1000 genomes]
rs34872040	1.00[AMR][1000 genomes]
rs34894549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35226954	1.00[AMR][1000 genomes]
rs35802901	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35932672	1.00[AMR][1000 genomes]
rs5644	1.00[AMR][1000 genomes]
rs57074971	1.00[AMR][1000 genomes]
rs58627150	1.00[AMR][1000 genomes]
rs59016861	1.00[AMR][1000 genomes]
rs59294054	1.00[AMR][1000 genomes]
rs66639406	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs66788250	1.00[AMR][1000 genomes]
rs67599922	1.00[AMR][1000 genomes]
rs67919571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294102	1.00[AMR][1000 genomes]
rs73302113	1.00[AMR][1000 genomes]
rs73302117	1.00[AMR][1000 genomes]
rs73308310	1.00[AMR][1000 genomes]
rs73308323	1.00[AMR][1000 genomes]
rs73308329	1.00[AMR][1000 genomes]
rs73308333	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37912000-37930400	Weak transcription	Esophagus	oesophagus
2	chr17:37912800-37927400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:37913600-37926400	Genic enhancers	Fetal Thymus	thymus
4	chr17:37914400-37921200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr17:37914400-37921600	Weak transcription	Spleen	Spleen
6	chr17:37915800-37926000	Genic enhancers	Primary T cells fromperipheralblood	blood
7	chr17:37916000-37922400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr17:37917000-37922800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr17:37917000-37922800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:37917000-37925800	Genic enhancers	Thymus	Thymus
11	chr17:37917200-37921000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr17:37917200-37923000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr17:37917600-37923000	Strong transcription	Primary B cells from cord blood	blood
14	chr17:37918400-37920200	Enhancers	HSMM	muscle
15	chr17:37918400-37929400	Weak transcription	Colonic Mucosa	Colon
16	chr17:37918800-37920200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr17:37918800-37920800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr17:37919200-37920200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
19	chr17:37919200-37920600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:37919200-37923000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr17:37919200-37926000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr17:37919400-37922600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr17:37919600-37921200	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr17:37920000-37920600	Weak transcription	Primary T cells from cord blood	blood
25	chr17:37920000-37921000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr17:37920000-37921000	Strong transcription	GM12878-XiMat	blood
27	chr17:37920000-37922200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr17:37920000-37922800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr17:37920000-37930000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood

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