Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119808866..119811308-chr11:119828308..119830735,2	K562	blood:
2	chr11:119794302..119797063-chr11:119809954..119812840,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10160771	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11217587	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12272862	0.85[EUR][1000 genomes]
rs12277299	0.85[EUR][1000 genomes]
rs12278045	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12286715	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12294678	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12294978	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295249	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295555	0.85[EUR][1000 genomes]
rs1579885	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1944503	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34006113	0.85[EUR][1000 genomes]
rs35462788	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35503012	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35661813	0.84[EUR][1000 genomes]
rs35778099	0.85[EUR][1000 genomes]
rs55801969	0.85[EUR][1000 genomes]
rs61899022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7115154	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119807400-119812000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:119809000-119811600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:119809600-119811400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:119809600-119812600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:119809800-119811200	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:119809800-119811400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:119809800-119812400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:119810000-119814600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:119810200-119812400	Enhancers	Fetal Heart	heart

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