Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119833649..119836146-chr11:119840215..119843105,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10160771	0.85[EUR][1000 genomes]
rs11217587	0.85[EUR][1000 genomes]
rs12272862	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277299	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278045	0.84[EUR][1000 genomes]
rs12286715	0.85[EUR][1000 genomes]
rs12294678	0.84[EUR][1000 genomes]
rs12294978	0.85[EUR][1000 genomes]
rs12295249	0.85[EUR][1000 genomes]
rs12295555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1579885	0.84[EUR][1000 genomes]
rs1944503	0.86[EUR][1000 genomes]
rs34006113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34239965	0.85[EUR][1000 genomes]
rs35462788	0.85[EUR][1000 genomes]
rs35503012	0.86[EUR][1000 genomes]
rs35661813	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35778099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899022	0.84[EUR][1000 genomes]
rs7115154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119836200-119845600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119836400-119841800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119837400-119844200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:119841000-119841800	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:119841000-119842200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:119841200-119841800	Enhancers	Brain Hippocampus Middle	brain
7	chr11:119841400-119841800	Enhancers	Brain Angular Gyrus	brain
8	chr11:119841400-119842000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:119841600-119844400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:119841600-119844400	Weak transcription	Brain Substantia Nigra	brain
11	chr11:119841600-119845600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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