Variant report

Variant	rs35462788
Chromosome Location	chr11:119811909-119811910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10160771	0.98[EUR][1000 genomes]
rs11217587	0.98[EUR][1000 genomes]
rs12272862	0.85[EUR][1000 genomes]
rs12277299	0.85[EUR][1000 genomes]
rs12278045	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12286715	0.98[EUR][1000 genomes]
rs12294678	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12294978	0.98[EUR][1000 genomes]
rs12295249	0.98[EUR][1000 genomes]
rs12295555	0.85[EUR][1000 genomes]
rs1579885	0.94[EUR][1000 genomes]
rs1944503	0.99[EUR][1000 genomes]
rs34006113	0.85[EUR][1000 genomes]
rs34239965	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35503012	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35661813	0.86[EUR][1000 genomes]
rs35778099	0.85[EUR][1000 genomes]
rs55801969	0.85[EUR][1000 genomes]
rs61899022	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7115154	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119807400-119812000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:119809600-119812600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:119809800-119812400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:119810000-119814600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:119810200-119812400	Enhancers	Fetal Heart	heart
6	chr11:119811200-119812000	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:119811200-119812000	Enhancers	Brain Hippocampus Middle	brain
8	chr11:119811200-119812000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr11:119811200-119812000	Enhancers	Fetal Muscle Leg	muscle
10	chr11:119811200-119812000	Enhancers	Left Ventricle	heart
11	chr11:119811200-119812000	Enhancers	Right Ventricle	heart
12	chr11:119811200-119813200	Enhancers	Fetal Intestine Large	intestine
13	chr11:119811400-119812200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:119811400-119813000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:119811400-119815000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:119811600-119812000	Enhancers	Right Atrium	heart
17	chr11:119811600-119812200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr11:119811800-119812400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:119811800-119813400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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