Variant report

Variant	rs34300531
Chromosome Location	chr12:58309286-58309287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:58308519..58310460-chr12:58315580..58318461,2	K562	blood:
2	chr12:58301756..58303544-chr12:58307967..58310549,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12816216	0.94[ASN][1000 genomes]
rs12822306	0.96[ASN][1000 genomes]
rs12827346	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12829858	0.96[ASN][1000 genomes]
rs12830273	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12831787	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17120038	0.96[ASN][1000 genomes]
rs17120048	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17120057	0.96[ASN][1000 genomes]
rs17120058	0.96[ASN][1000 genomes]
rs17120198	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17120201	0.96[ASN][1000 genomes]
rs17120203	0.96[ASN][1000 genomes]
rs2888286	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2888287	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34080411	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34142683	0.96[ASN][1000 genomes]
rs34170251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34221389	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34238095	0.96[ASN][1000 genomes]
rs34437870	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34499234	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34567504	0.90[ASN][1000 genomes]
rs35326083	0.96[ASN][1000 genomes]
rs35364486	0.90[ASN][1000 genomes]
rs35375157	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35712620	0.96[ASN][1000 genomes]
rs35726562	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3829337	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56964775	0.96[ASN][1000 genomes]
rs61015952	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61935800	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61935801	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6581160	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6581162	0.96[ASN][1000 genomes]
rs6581163	0.96[ASN][1000 genomes]
rs7132343	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7133275	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7136078	0.96[ASN][1000 genomes]
rs7137226	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7295307	0.96[ASN][1000 genomes]
rs7299512	0.96[ASN][1000 genomes]
rs7303136	0.96[ASN][1000 genomes]
rs7307628	0.96[ASN][1000 genomes]
rs7962775	0.82[AFR][1000 genomes]
rs7968265	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7970948	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7971139	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7978519	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559046	chr12:58162085-58478598	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58307800-58309600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:58308800-58310400	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links