Variant report

Variant	rs7137226
Chromosome Location	chr12:58303535-58303536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:58303497..58305091-chr12:58323609..58325294,2	K562	blood:
2	chr12:58301453..58303781-chr12:58303962..58305605,2	K562	blood:
3	chr12:58301268..58304747-chr12:58305010..58307816,3	MCF-7	breast:
4	chr12:58237044..58239762-chr12:58301232..58304430,3	MCF-7	breast:
5	chr12:58301756..58303544-chr12:58307967..58310549,2	K562	blood:
6	chr12:58290453..58292772-chr12:58301540..58304170,2	K562	blood:

Variant related genes	Relation type
ENSG00000175215	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11172377	1.00[GIH][hapmap]
rs12309291	1.00[GIH][hapmap]
rs12816216	0.82[ASN][1000 genomes]
rs12822306	0.83[ASN][1000 genomes]
rs12827346	0.83[ASN][1000 genomes]
rs12829858	0.83[ASN][1000 genomes]
rs12831787	0.83[ASN][1000 genomes]
rs17120038	0.93[CHD][hapmap];0.83[ASN][1000 genomes]
rs17120048	0.85[ASN][1000 genomes]
rs17120057	0.83[ASN][1000 genomes]
rs17120058	0.83[ASN][1000 genomes]
rs17120198	0.83[ASN][1000 genomes]
rs17120201	0.83[ASN][1000 genomes]
rs17120203	0.83[ASN][1000 genomes]
rs2888286	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2888287	0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34080411	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34142683	0.83[ASN][1000 genomes]
rs34170251	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs34221389	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34238095	0.83[ASN][1000 genomes]
rs34300531	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs34437870	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34499234	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35326083	0.83[ASN][1000 genomes]
rs35375157	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35414690	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs35712620	0.83[ASN][1000 genomes]
rs35726562	0.83[ASN][1000 genomes]
rs3829337	0.83[ASN][1000 genomes]
rs56964775	0.83[ASN][1000 genomes]
rs61015952	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61935800	0.83[ASN][1000 genomes]
rs61935801	0.83[ASN][1000 genomes]
rs6581160	0.83[ASN][1000 genomes]
rs6581162	0.93[CHD][hapmap];0.83[ASN][1000 genomes]
rs6581163	0.92[CHD][hapmap];0.83[ASN][1000 genomes]
rs7132343	0.85[ASN][1000 genomes]
rs7133275	1.00[ASW][hapmap];1.00[CHD][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7136078	0.83[ASN][1000 genomes]
rs7295307	0.83[ASN][1000 genomes]
rs7299512	0.83[ASN][1000 genomes]
rs7303136	0.83[ASN][1000 genomes]
rs7307628	0.83[ASN][1000 genomes]
rs7962775	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7968265	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7970948	0.83[ASN][1000 genomes]
rs7971139	0.83[ASN][1000 genomes]
rs7977734	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7978519	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559046	chr12:58162085-58478598	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58303400-58308400	Weak transcription	Fetal Thymus	thymus

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