Variant report

Variant	rs7962775
Chromosome Location	chr12:58301100-58301101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000123297	Chromatin interaction
ENSG00000037897	Chromatin interaction
ENSG00000175215	Chromatin interaction
ENSG00000111012	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12816216	0.82[JPT][hapmap]
rs17120038	0.82[JPT][hapmap]
rs17120048	0.82[JPT][hapmap]
rs17120057	0.82[JPT][hapmap]
rs17120198	0.82[JPT][hapmap]
rs34170251	0.82[AFR][1000 genomes]
rs34221389	0.81[AFR][1000 genomes]
rs34300531	0.82[AFR][1000 genomes]
rs35414690	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3829337	0.82[JPT][hapmap]
rs61015952	0.81[AFR][1000 genomes]
rs6581162	0.82[JPT][hapmap]
rs6581163	0.82[JPT][hapmap]
rs7136078	0.82[JPT][hapmap]
rs7137226	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7295307	0.82[JPT][hapmap]
rs7977734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7978519	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559046	chr12:58162085-58478598	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58300200-58303000	Weak transcription	Fetal Thymus	thymus
2	chr12:58300600-58301600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr12:58300800-58301400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:58301000-58301200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:58301000-58301200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:58301000-58301200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:58301000-58301200	Enhancers	Placenta	Placenta
8	chr12:58301000-58301200	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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