Variant report
Variant | rs34328995 |
---|---|
Chromosome Location | chr5:127879132-127879133 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:127873521..127875105-chr5:127878457..127880160,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000138829 | Chromatin interaction |
ENSG00000113396 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10428638 | 0.87[EUR][1000 genomes] |
rs11241967 | 1.00[EUR][1000 genomes] |
rs11952739 | 0.92[EUR][1000 genomes] |
rs13159754 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13165744 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs13168117 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13170312 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs13173006 | 0.87[EUR][1000 genomes] |
rs13174726 | 1.00[EUR][1000 genomes] |
rs13180032 | 0.87[EUR][1000 genomes] |
rs13182099 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13183752 | 0.87[EUR][1000 genomes] |
rs13183908 | 0.84[EUR][1000 genomes] |
rs13184076 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs13186044 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs13186599 | 1.00[EUR][1000 genomes] |
rs13186921 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34014539 | 0.83[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs34045695 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34062154 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34195715 | 0.87[EUR][1000 genomes] |
rs34343418 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs34404840 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34502997 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs34548575 | 0.87[EUR][1000 genomes] |
rs34607368 | 0.87[EUR][1000 genomes] |
rs34891325 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34891758 | 0.87[EUR][1000 genomes] |
rs34961050 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35153576 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35307918 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35321631 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs35372786 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35439767 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35658331 | 1.00[EUR][1000 genomes] |
rs36017812 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62390671 | 1.00[EUR][1000 genomes] |
rs62390689 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs62390721 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62392590 | 1.00[EUR][1000 genomes] |
rs62392636 | 0.84[EUR][1000 genomes] |
rs62392639 | 0.87[EUR][1000 genomes] |
rs6860642 | 1.00[EUR][1000 genomes] |
rs6860732 | 1.00[EUR][1000 genomes] |
rs71587984 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv531991 | chr5:127624564-127966085 | Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
2 | esv2763497 | chr5:127745955-127882468 | Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
3 | nsv530822 | chr5:127777365-127900742 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
4 | nsv427734 | chr5:127805281-128088632 | Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:127875200-127882400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
2 | chr5:127875400-127882400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |