Variant report

Variant	rs6860642
Chromosome Location	chr5:127959420-127959421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127958051..127960207-chr5:127966862..127969852,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10428638	0.87[EUR][1000 genomes]
rs11241967	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11952739	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13159754	1.00[EUR][1000 genomes]
rs13162214	0.81[AFR][1000 genomes]
rs13165744	0.87[EUR][1000 genomes]
rs13168117	1.00[EUR][1000 genomes]
rs13170312	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13173006	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13174726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13179269	0.81[AFR][1000 genomes]
rs13180032	0.87[EUR][1000 genomes]
rs13182099	1.00[EUR][1000 genomes]
rs13183752	0.87[EUR][1000 genomes]
rs13183908	0.84[EUR][1000 genomes]
rs13184076	0.87[EUR][1000 genomes]
rs13186044	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13186599	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13186921	1.00[EUR][1000 genomes]
rs34014539	0.84[EUR][1000 genomes]
rs34045695	1.00[EUR][1000 genomes]
rs34062154	1.00[EUR][1000 genomes]
rs34195715	0.87[EUR][1000 genomes]
rs34328995	1.00[EUR][1000 genomes]
rs34343418	0.87[EUR][1000 genomes]
rs34404840	1.00[EUR][1000 genomes]
rs34502997	0.87[EUR][1000 genomes]
rs34548575	0.87[EUR][1000 genomes]
rs34607368	0.87[EUR][1000 genomes]
rs34891325	1.00[EUR][1000 genomes]
rs34891758	0.87[EUR][1000 genomes]
rs34961050	1.00[EUR][1000 genomes]
rs35153576	1.00[EUR][1000 genomes]
rs35307918	1.00[EUR][1000 genomes]
rs35321631	0.87[EUR][1000 genomes]
rs35372786	1.00[EUR][1000 genomes]
rs35439767	1.00[EUR][1000 genomes]
rs35658331	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36017812	1.00[EUR][1000 genomes]
rs4418144	0.81[AFR][1000 genomes]
rs4587123	0.81[AFR][1000 genomes]
rs62390671	1.00[EUR][1000 genomes]
rs62390689	0.96[EUR][1000 genomes]
rs62390721	1.00[EUR][1000 genomes]
rs62392590	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62392636	0.84[EUR][1000 genomes]
rs62392639	0.87[EUR][1000 genomes]
rs6860732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71587984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531991	chr5:127624564-127966085	Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830484	chr5:127936347-128087308	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127958400-127961600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:127959200-127960600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links