Variant report

Variant	rs34343418
Chromosome Location	chr5:127975602-127975603
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10428638	1.00[EUR][1000 genomes]
rs11241967	0.87[EUR][1000 genomes]
rs13159754	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13165744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13168117	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13170312	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13173006	1.00[EUR][1000 genomes]
rs13174726	0.87[EUR][1000 genomes]
rs13180032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13182099	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13183752	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13183908	0.97[EUR][1000 genomes]
rs13184076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13186044	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13186599	0.87[EUR][1000 genomes]
rs13186921	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34014539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34045695	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34062154	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34195715	1.00[EUR][1000 genomes]
rs34328995	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34404840	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34502997	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34548575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34607368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34891325	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34891758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34961050	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35153576	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35307918	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35321631	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35372786	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35439767	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35658331	0.87[EUR][1000 genomes]
rs36017812	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62390671	0.87[EUR][1000 genomes]
rs62390689	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62390721	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62392590	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62392636	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62392638	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62392639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6860642	0.87[EUR][1000 genomes]
rs6860732	0.87[EUR][1000 genomes]
rs71587984	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830484	chr5:127936347-128087308	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127974200-127979200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:127974400-127979200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:127974400-127979800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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