Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12957312	1.00[ASN][1000 genomes]
rs12964359	1.00[ASN][1000 genomes]
rs12967606	1.00[ASN][1000 genomes]
rs1630405	1.00[ASN][1000 genomes]
rs1680645	1.00[ASN][1000 genomes]
rs17661987	1.00[ASN][1000 genomes]
rs17718389	1.00[ASN][1000 genomes]
rs17718513	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34959937	1.00[ASN][1000 genomes]
rs35703749	1.00[ASN][1000 genomes]
rs501570	1.00[ASN][1000 genomes]
rs616082	1.00[ASN][1000 genomes]
rs66534107	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668996	1.00[ASN][1000 genomes]
rs71361358	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71361360	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7227035	1.00[ASN][1000 genomes]
rs73409433	1.00[ASN][1000 genomes]
rs73411554	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9952659	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065285	chr18:29527884-29614986	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29524600-29530600	Weak transcription	Brain Angular Gyrus	brain
2	chr18:29524800-29530800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:29525000-29530400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:29525000-29530400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:29525400-29528400	Weak transcription	K562	blood
6	chr18:29525600-29537400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr18:29525800-29530000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr18:29526800-29529400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr18:29527200-29530000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr18:29527400-29530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr18:29527600-29528800	Enhancers	Fetal Intestine Large	intestine
12	chr18:29527600-29528800	Enhancers	Fetal Intestine Small	intestine
13	chr18:29527800-29528400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr18:29528200-29530200	Weak transcription	HepG2	liver

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