Variant report
| Variant | rs616082 |
|---|---|
| Chromosome Location | chr18:29367640-29367641 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:29364264..29367845-chr18:29371473..29373588,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs12957312 | 1.00[ASN][1000 genomes] |
| rs12964359 | 1.00[ASN][1000 genomes] |
| rs12967431 | 1.00[ASN][1000 genomes] |
| rs12967606 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12967642 | 1.00[ASN][1000 genomes] |
| rs1630405 | 1.00[ASN][1000 genomes] |
| rs1680645 | 1.00[ASN][1000 genomes] |
| rs17661987 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17718389 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17718513 | 1.00[ASN][1000 genomes] |
| rs34329580 | 1.00[ASN][1000 genomes] |
| rs34959937 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35129944 | 1.00[ASN][1000 genomes] |
| rs35217404 | 1.00[ASN][1000 genomes] |
| rs35271356 | 1.00[ASN][1000 genomes] |
| rs35703749 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs501570 | 1.00[ASN][1000 genomes] |
| rs66534107 | 1.00[ASN][1000 genomes] |
| rs668996 | 1.00[ASN][1000 genomes] |
| rs71361333 | 1.00[ASN][1000 genomes] |
| rs71361335 | 1.00[ASN][1000 genomes] |
| rs71361336 | 1.00[ASN][1000 genomes] |
| rs71361341 | 1.00[ASN][1000 genomes] |
| rs71361344 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71361345 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71361358 | 1.00[ASN][1000 genomes] |
| rs71361360 | 1.00[ASN][1000 genomes] |
| rs73409433 | 1.00[ASN][1000 genomes] |
| rs73411554 | 1.00[ASN][1000 genomes] |
| rs8083292 | 1.00[ASN][1000 genomes] |
| rs8083894 | 1.00[ASN][1000 genomes] |
| rs8084382 | 1.00[ASN][1000 genomes] |
| rs8084675 | 1.00[ASN][1000 genomes] |
| rs9952659 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1059078 | chr18:29225522-29454980 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv543675 | chr18:29225522-29454980 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv431975 | chr18:29311034-29527902 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 4 | nsv1057229 | chr18:29335175-29514265 | Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:29363200-29375600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr18:29367400-29367800 | Enhancers | Fetal Intestine Large | intestine |
| 3 | chr18:29367400-29368400 | Enhancers | Fetal Intestine Small | intestine |
