Variant report

Variant	rs34382986
Chromosome Location	chr12:33404058-33404059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11052569	1.00[ASN][1000 genomes]
rs11052571	0.98[ASN][1000 genomes]
rs11052572	0.98[ASN][1000 genomes]
rs11052573	0.98[ASN][1000 genomes]
rs11052574	0.98[ASN][1000 genomes]
rs11052578	0.90[EUR][1000 genomes]
rs12307589	0.98[ASN][1000 genomes]
rs12311492	0.98[ASN][1000 genomes]
rs12314523	0.98[ASN][1000 genomes]
rs12314583	0.98[ASN][1000 genomes]
rs12813479	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12814596	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12818822	1.00[ASN][1000 genomes]
rs12819954	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12820466	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12821548	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12821754	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12827859	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12830962	0.81[EUR][1000 genomes]
rs28402793	0.98[ASN][1000 genomes]
rs28639801	0.98[ASN][1000 genomes]
rs34390674	0.81[EUR][1000 genomes]
rs34461395	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34617614	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34787755	0.95[EUR][1000 genomes]
rs34975039	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35144121	0.81[EUR][1000 genomes]
rs35417019	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35472257	0.85[EUR][1000 genomes]
rs35506599	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35653702	0.85[EUR][1000 genomes]
rs35714469	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35846513	0.81[EUR][1000 genomes]
rs4328282	0.83[ASN][1000 genomes]
rs4931714	0.90[EUR][1000 genomes]
rs57985634	0.86[ASN][1000 genomes]
rs60723095	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs67122293	0.98[ASN][1000 genomes]
rs68189829	0.90[EUR][1000 genomes]
rs71457699	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7968999	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv669	chr12:33362795-33418800	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832368	chr12:33368962-33588498	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1048521	chr12:33373737-33430095	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv826317	chr12:33380271-33446428	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv558238	chr12:33387308-33404713	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1035988	chr12:33399053-33699363	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33403000-33413200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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