Variant report

Variant	rs35653702
Chromosome Location	chr12:33359150-33359151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11052578	0.85[EUR][1000 genomes]
rs12811328	0.83[AMR][1000 genomes]
rs12813479	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12814596	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815360	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12816246	0.85[EUR][1000 genomes]
rs12819954	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12820466	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821548	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821754	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827744	0.83[AMR][1000 genomes]
rs12827859	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830581	0.83[AMR][1000 genomes]
rs12830962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17555730	1.00[AFR][1000 genomes]
rs34166270	0.85[EUR][1000 genomes]
rs34382986	0.85[EUR][1000 genomes]
rs34390674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34411183	1.00[AFR][1000 genomes]
rs34461395	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34506464	0.83[AMR][1000 genomes]
rs34617614	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34777911	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34787755	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34975039	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35144121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35151039	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35398283	0.83[AMR][1000 genomes]
rs35417019	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35472257	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35506599	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35681913	0.83[AMR][1000 genomes]
rs35714469	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35760728	0.83[AMR][1000 genomes]
rs35846513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35848741	0.83[AMR][1000 genomes]
rs35895521	1.00[AMR][1000 genomes]
rs36042953	0.83[AMR][1000 genomes]
rs4931714	0.85[EUR][1000 genomes]
rs68189829	0.85[EUR][1000 genomes]
rs71457684	0.83[AMR][1000 genomes]
rs71457691	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71457692	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71457696	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71457699	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1054927	chr12:33325003-33379954	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3445417	chr12:33358734-33401031	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33358600-33359600	Enhancers	Colon Smooth Muscle	Colon
2	chr12:33358800-33359400	Enhancers	Brain Anterior Caudate	brain

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