Variant report

Variant	rs34777911
Chromosome Location	chr12:33268746-33268747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:33245520..33247527-chr12:33268044..33270867,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12811328	0.83[AMR][1000 genomes]
rs12815360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12816246	1.00[EUR][1000 genomes]
rs12827254	0.83[AMR][1000 genomes]
rs12827744	0.83[AMR][1000 genomes]
rs12830581	0.83[AMR][1000 genomes]
rs12830962	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17553487	0.83[AMR][1000 genomes]
rs34018607	0.83[AMR][1000 genomes]
rs34113579	0.83[AMR][1000 genomes]
rs34166270	1.00[EUR][1000 genomes]
rs34202049	0.83[AMR][1000 genomes]
rs34234620	0.83[AMR][1000 genomes]
rs34390674	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34398102	0.83[AMR][1000 genomes]
rs34506464	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34942504	0.83[AMR][1000 genomes]
rs35144121	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35151039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35285975	0.83[AMR][1000 genomes]
rs35398283	0.83[AMR][1000 genomes]
rs35472257	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35522863	0.83[AMR][1000 genomes]
rs35607659	0.83[AMR][1000 genomes]
rs35653702	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35681913	0.83[AMR][1000 genomes]
rs35687751	0.83[AMR][1000 genomes]
rs35760728	0.83[AMR][1000 genomes]
rs35846513	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35848741	0.83[AMR][1000 genomes]
rs35895521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35942647	0.83[AMR][1000 genomes]
rs36042953	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71457664	0.83[AMR][1000 genomes]
rs71457669	0.83[AMR][1000 genomes]
rs71457671	0.83[AMR][1000 genomes]
rs71457675	0.83[AMR][1000 genomes]
rs71457678	0.83[AMR][1000 genomes]
rs71457684	0.83[AMR][1000 genomes]
rs71457691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71457692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71457696	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1044931	chr12:33179957-33307362	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1046565	chr12:33252166-33294648	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035521	chr12:33265578-33293907	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33261600-33269200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:33265600-33268800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:33265600-33269000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:33265600-33269000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:33265600-33269000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:33268000-33269800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:33268200-33268800	Enhancers	NHEK	skin
8	chr12:33268200-33269400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:33268200-33269800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:33268200-33270400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:33268400-33269800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr12:33268600-33268800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr12:33268600-33269200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:33268600-33269200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr12:33268600-33269600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links