Variant report

Variant	rs34484855
Chromosome Location	chr2:189100751-189100752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10168305	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10175838	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10179836	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10179899	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10180000	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10184703	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10187646	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10187791	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10189197	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10189416	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10195059	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10199261	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10204144	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10209424	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10469734	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10469735	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10931333	0.88[EUR][1000 genomes]
rs12693490	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12693491	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12693492	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12693493	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12693494	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12693495	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12693497	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12987018	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12987553	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12995107	0.88[EUR][1000 genomes]
rs12995727	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13000379	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13003679	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13003972	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13007721	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13011049	0.83[EUR][1000 genomes]
rs13021294	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13027148	0.82[EUR][1000 genomes]
rs13027220	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13029662	0.88[EUR][1000 genomes]
rs13032231	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13382200	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13385282	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13390401	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13390524	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13394232	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13394422	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13403228	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13404958	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13413164	0.93[ASN][1000 genomes]
rs13429075	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2004888	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28572636	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2882449	0.83[EUR][1000 genomes]
rs34000922	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34066981	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34135749	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34140900	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34142137	0.88[EUR][1000 genomes]
rs34353529	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34358898	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34395949	0.86[EUR][1000 genomes]
rs34555222	0.88[EUR][1000 genomes]
rs34557812	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34575499	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34583514	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34762706	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34762794	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35015018	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35060323	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35143496	0.83[EUR][1000 genomes]
rs35196443	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35325130	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35355034	0.88[EUR][1000 genomes]
rs35442646	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35536225	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35699394	0.86[EUR][1000 genomes]
rs35877064	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36174757	0.87[ASN][1000 genomes]
rs3889818	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3924673	0.83[EUR][1000 genomes]
rs4128404	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4535011	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4666757	0.88[EUR][1000 genomes]
rs4667219	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4667220	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4992742	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4992743	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55852512	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6434277	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66948063	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66993342	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6718697	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720002	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720983	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67344766	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67389016	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6748077	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67621133	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67804812	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72901602	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909512	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72909520	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72911423	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72911800	0.83[EUR][1000 genomes]
rs7571197	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7571494	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7579554	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7593232	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9288152	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9288153	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9808523	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9808557	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv431879	chr2:189079494-189118494	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189097000-189101600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:189100400-189121200	Weak transcription	K562	blood
3	chr2:189100600-189101000	Enhancers	GM12878-XiMat	blood

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