Variant report

Variant	rs34514189
Chromosome Location	chr3:49373045-49373046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49372543..49374082-chr3:49376173..49378809,2	MCF-7	breast:
2	chr3:49371564..49374300-chr3:49376329..49379004,4	MCF-7	breast:
3	chr3:49045291..49047011-chr3:49371265..49373898,2	K562	blood:

Variant related genes	Relation type
ENSG00000114316	Chromatin interaction
ENSG00000178252	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11707940	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11709788	0.83[ASN][1000 genomes]
rs11920251	0.83[ASN][1000 genomes]
rs12497569	0.85[ASN][1000 genomes]
rs12715435	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13077723	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13078949	0.83[ASN][1000 genomes]
rs1865741	0.85[ASN][1000 genomes]
rs2230929	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2304442	0.90[EUR][1000 genomes]
rs34142492	0.83[ASN][1000 genomes]
rs34366700	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34567776	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34915642	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35446411	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35869135	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4410472	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4955431	0.85[ASN][1000 genomes]
rs56038006	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67882627	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6795772	0.85[ASN][1000 genomes]
rs73086105	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9818758	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9863142	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9864406	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9873994	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9874474	0.92[EUR][1000 genomes]
rs9883409	0.92[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs34514189	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs34514189	RBM6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49312600-49375800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:49315200-49373600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:49315200-49375000	Strong transcription	Fetal Stomach	stomach
4	chr3:49319200-49374800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:49320200-49375000	Strong transcription	Thymus	Thymus
6	chr3:49321800-49373600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr3:49326800-49373400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:49326800-49375000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:49335000-49375000	Strong transcription	Placenta	Placenta
10	chr3:49335200-49375200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr3:49338200-49375000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:49350400-49374800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:49351400-49374200	Strong transcription	Dnd41	blood
14	chr3:49351600-49373400	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr3:49352000-49375000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:49352000-49375000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:49352200-49375000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:49352800-49374800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:49354800-49376600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:49357400-49374800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:49362600-49374400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:49362600-49376800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:49363200-49376800	Weak transcription	Small Intestine	intestine
24	chr3:49363400-49376600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:49363400-49376800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:49365400-49376600	Weak transcription	Stomach Mucosa	stomach
27	chr3:49366400-49374800	Strong transcription	Liver	Liver
28	chr3:49366600-49374600	Strong transcription	Spleen	Spleen
29	chr3:49366600-49375000	Strong transcription	Fetal Muscle Leg	muscle
30	chr3:49366800-49373200	Strong transcription	Colon Smooth Muscle	Colon
31	chr3:49366800-49373400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:49366800-49373600	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr3:49366800-49374600	Strong transcription	Lung	lung
34	chr3:49367000-49373200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:49367000-49374800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:49367000-49375200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:49367000-49376200	Weak transcription	Right Atrium	heart
38	chr3:49367200-49375600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:49368600-49374600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:49368800-49373200	Strong transcription	Primary hematopoietic stem cells	blood
41	chr3:49368800-49375000	Strong transcription	Brain Cingulate Gyrus	brain
42	chr3:49369000-49373200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:49369000-49373200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr3:49369000-49373200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:49369000-49373200	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr3:49369000-49374800	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:49369200-49373200	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr3:49369200-49375000	Strong transcription	Fetal Lung	lung
49	chr3:49369200-49376600	Weak transcription	Colonic Mucosa	Colon
50	chr3:49369600-49373200	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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