Variant report

Variant	rs34567776
Chromosome Location	chr3:49375349-49375350
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49374158..49376320-chr3:49377040..49379107,2	K562	blood:
2	chr3:49375139..49377482-chr3:49460180..49462859,2	MCF-7	breast:
3	chr3:49375307..49378756-chr3:49465334..49469314,4	K562	blood:
4	chr3:49375112..49379681-chr3:49446166..49452291,17	K562	blood:

Variant related genes	Relation type
ENSG00000235261	Chromatin interaction
ENSG00000145029	Chromatin interaction
ENSG00000145022	Chromatin interaction
ENSG00000114316	Chromatin interaction
ENSG00000145020	Chromatin interaction
ENSG00000067560	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11707940	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11709788	0.88[ASN][1000 genomes]
rs11720964	0.81[ASN][1000 genomes]
rs11920251	0.88[ASN][1000 genomes]
rs12497569	0.90[ASN][1000 genomes]
rs12715435	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13077723	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13078949	0.88[ASN][1000 genomes]
rs1865741	0.90[ASN][1000 genomes]
rs2230929	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2304442	0.91[EUR][1000 genomes]
rs34142492	0.88[ASN][1000 genomes]
rs34366700	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34514189	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34915642	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35446411	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35869135	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4410472	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4554002	0.83[ASN][1000 genomes]
rs4955431	0.90[ASN][1000 genomes]
rs56038006	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67882627	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795772	0.90[ASN][1000 genomes]
rs73086105	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7640903	0.83[ASN][1000 genomes]
rs9818758	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9863142	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9864406	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9873994	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9874474	0.93[EUR][1000 genomes]
rs9883409	0.93[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs34567776	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs34567776	RBM6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49312600-49375800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:49354800-49376600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:49362600-49376800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:49363200-49376800	Weak transcription	Small Intestine	intestine
5	chr3:49363400-49376600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:49363400-49376800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:49365400-49376600	Weak transcription	Stomach Mucosa	stomach
8	chr3:49367000-49376200	Weak transcription	Right Atrium	heart
9	chr3:49367200-49375600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:49369200-49376600	Weak transcription	Colonic Mucosa	Colon
11	chr3:49371800-49376600	Weak transcription	A549	lung
12	chr3:49372200-49376800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:49372400-49376200	Weak transcription	Right Ventricle	heart
14	chr3:49372400-49376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:49372600-49376200	Weak transcription	Esophagus	oesophagus
16	chr3:49372600-49376200	Weak transcription	Fetal Kidney	kidney
17	chr3:49372600-49376200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:49372600-49376800	Weak transcription	Aorta	Aorta
19	chr3:49372600-49376800	Weak transcription	Ovary	ovary
20	chr3:49372800-49376600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:49372800-49376600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:49373000-49375600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:49373000-49375600	Weak transcription	Hela-S3	cervix
24	chr3:49373000-49375800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
25	chr3:49373000-49375800	Weak transcription	Gastric	stomach
26	chr3:49373000-49376000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:49373000-49376200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:49373000-49376200	Weak transcription	Brain Substantia Nigra	brain
29	chr3:49373000-49376200	Weak transcription	Psoas Muscle	Psoas
30	chr3:49373000-49376200	Weak transcription	HSMMtube	muscle
31	chr3:49373000-49376200	Weak transcription	HUVEC	blood vessel
32	chr3:49373000-49376200	Weak transcription	K562	blood
33	chr3:49373000-49376200	Weak transcription	NH-A	brain
34	chr3:49373000-49376200	Weak transcription	NHDF-Ad	bronchial
35	chr3:49373000-49376400	Weak transcription	Brain Anterior Caudate	brain
36	chr3:49373000-49376400	Weak transcription	Fetal Brain Female	brain
37	chr3:49373000-49376600	Weak transcription	Pancreas	Pancrea
38	chr3:49373000-49376600	Weak transcription	NHEK	skin
39	chr3:49373200-49375400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:49373200-49375400	Strong transcription	Fetal Intestine Small	intestine
41	chr3:49373200-49375600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:49373200-49375600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr3:49373200-49375600	Weak transcription	Colon Smooth Muscle	Colon
44	chr3:49373200-49375600	Weak transcription	HepG2	liver
45	chr3:49373200-49375800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
46	chr3:49373200-49375800	Weak transcription	Left Ventricle	heart
47	chr3:49373200-49376200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:49373200-49376200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:49373200-49376200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:49373200-49376200	Weak transcription	Fetal Heart	heart

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