Variant report

Variant	rs34531959
Chromosome Location	chr14:69937523-69937524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12879905	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12884741	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12890434	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17106981	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17107007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34112413	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34644391	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34765661	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35876363	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71423358	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71423359	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1048882	chr14:69920881-69976694	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052107	chr14:69922552-69969297	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1039230	chr14:69922552-69972002	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1039192	chr14:69922552-69976694	Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv456335	chr14:69928307-69971598	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv564967	chr14:69928307-69971598	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69903600-69937800	Weak transcription	Psoas Muscle	Psoas
2	chr14:69923600-69950400	Weak transcription	Gastric	stomach
3	chr14:69925400-69939600	Weak transcription	Pancreas	Pancrea
4	chr14:69925400-69942000	Weak transcription	Spleen	Spleen
5	chr14:69925600-69940000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:69925600-69940000	Weak transcription	Hela-S3	cervix
7	chr14:69926000-69940000	Weak transcription	Brain Anterior Caudate	brain
8	chr14:69926000-69940000	Weak transcription	Fetal Intestine Small	intestine
9	chr14:69927800-69939400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:69928000-69941000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr14:69928600-69950600	Weak transcription	Aorta	Aorta
12	chr14:69928800-69940200	Weak transcription	Thymus	Thymus
13	chr14:69928800-69940400	Weak transcription	Adipose Nuclei	Adipose
14	chr14:69928800-69941000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:69929000-69938800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr14:69929000-69940200	Weak transcription	HSMMtube	muscle
17	chr14:69929000-69940400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:69929000-69941400	Weak transcription	Ovary	ovary
19	chr14:69929400-69938800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr14:69929400-69940200	Weak transcription	Placenta	Placenta
21	chr14:69931800-69938200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:69931800-69940000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:69936200-69940200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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