Variant report

Variant	rs34544559
Chromosome Location	chr13:38501932-38501933
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12429858	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1337594	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1337595	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1337605	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1337607	0.86[EUR][1000 genomes]
rs1415599	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415628	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1556781	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2210979	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2485286	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2485291	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2485483	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35140422	0.86[AFR][1000 genomes]
rs4943548	0.86[EUR][1000 genomes]
rs4943551	0.86[EUR][1000 genomes]
rs6563572	0.85[EUR][1000 genomes]
rs6563573	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6563574	0.85[EUR][1000 genomes]
rs71423167	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7322764	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7327323	0.97[ASN][1000 genomes]
rs7336052	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7992543	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7994671	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7994826	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs817729	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315526	0.86[EUR][1000 genomes]
rs945858	0.86[EUR][1000 genomes]
rs945859	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548093	0.85[ASN][1000 genomes]
rs9548104	0.86[EUR][1000 genomes]
rs9548107	0.86[EUR][1000 genomes]
rs9548108	0.85[EUR][1000 genomes]
rs9548109	0.86[EUR][1000 genomes]
rs9566279	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9576402	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576405	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9576406	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9576424	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899997	chr13:38480878-38518459	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38500200-38503600	Weak transcription	Fetal Heart	heart
2	chr13:38500200-38508400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:38500800-38508400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:38501600-38502000	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links