Variant report

Variant	rs9576402
Chromosome Location	chr13:38517070-38517071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:38515658..38518937-chr13:38531809..38534635,3	K562	blood:
2	chr13:38505618..38507408-chr13:38515296..38517642,2	K562	blood:
3	chr13:38514672..38518463-chr13:38523225..38527429,4	K562	blood:
4	chr13:38498487..38501479-chr13:38515502..38517509,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12429104	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12429858	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1337594	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1337595	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1337605	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337607	0.81[EUR][1000 genomes]
rs1415599	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415628	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1556781	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591672	0.81[EUR][1000 genomes]
rs2210979	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2485286	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485291	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485298	0.87[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs2485483	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2485495	0.83[EUR][1000 genomes]
rs2485497	0.81[EUR][1000 genomes]
rs2485501	0.81[EUR][1000 genomes]
rs34544559	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35140422	1.00[AFR][1000 genomes]
rs4943548	0.81[EUR][1000 genomes]
rs4943551	0.81[EUR][1000 genomes]
rs6563572	0.83[EUR][1000 genomes]
rs6563573	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6563574	0.83[EUR][1000 genomes]
rs71423167	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7322764	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327323	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7336052	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7992543	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994671	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7994826	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs817729	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9315526	0.81[EUR][1000 genomes]
rs945858	0.81[EUR][1000 genomes]
rs945859	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548093	0.84[ASN][1000 genomes]
rs9548104	0.81[EUR][1000 genomes]
rs9548107	0.81[EUR][1000 genomes]
rs9548109	0.81[EUR][1000 genomes]
rs9566279	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9576405	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576406	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9576414	0.81[EUR][1000 genomes]
rs9576424	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899997	chr13:38480878-38518459	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38516600-38517600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:38516600-38517600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:38516600-38517800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:38517000-38517600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr13:38517000-38517600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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