Variant report
| Variant | rs9548093 |
|---|---|
| Chromosome Location | chr13:38473340-38473341 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs12429858 | 0.89[ASN][1000 genomes] |
| rs1337605 | 0.84[ASN][1000 genomes] |
| rs1337607 | 0.85[EUR][1000 genomes] |
| rs1415599 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1415628 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1556781 | 0.84[ASN][1000 genomes] |
| rs2210979 | 0.86[ASN][1000 genomes] |
| rs2485286 | 0.84[ASN][1000 genomes] |
| rs34544559 | 0.85[ASN][1000 genomes] |
| rs4943548 | 0.85[EUR][1000 genomes] |
| rs4943551 | 0.85[EUR][1000 genomes] |
| rs6563572 | 0.83[EUR][1000 genomes] |
| rs6563573 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6563574 | 0.83[EUR][1000 genomes] |
| rs7322764 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7327323 | 0.84[ASN][1000 genomes] |
| rs7336052 | 0.88[ASN][1000 genomes] |
| rs7992543 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7994671 | 0.81[EUR][1000 genomes] |
| rs7994826 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs817729 | 0.85[ASN][1000 genomes] |
| rs9315526 | 0.85[EUR][1000 genomes] |
| rs945858 | 0.85[EUR][1000 genomes] |
| rs945859 | 0.84[ASN][1000 genomes] |
| rs9548104 | 0.85[EUR][1000 genomes] |
| rs9548107 | 0.85[EUR][1000 genomes] |
| rs9548108 | 0.83[EUR][1000 genomes] |
| rs9548109 | 0.85[EUR][1000 genomes] |
| rs9576402 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv915901 | chr13:38199035-39032633 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv899996 | chr13:38459224-38577056 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:38472600-38474000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
