Variant report

Variant	rs345485
Chromosome Location	chr13:92389251-92389252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92008256..92010781-chr13:92387538..92390308,3	K562	blood:
2	chr13:92367826..92370130-chr13:92386601..92389593,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1332095	0.90[ASN][1000 genomes]
rs163729	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs163934	0.98[ASN][1000 genomes]
rs163935	0.98[ASN][1000 genomes]
rs168218	0.91[ASN][1000 genomes]
rs171060	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs189337	0.95[ASN][1000 genomes]
rs342710	0.98[ASN][1000 genomes]
rs342711	0.96[ASN][1000 genomes]
rs342712	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs342713	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs342714	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs342715	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs342716	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs342717	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs342718	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs342719	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs345477	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs345482	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs459110	0.90[ASN][1000 genomes]
rs465011	0.95[ASN][1000 genomes]
rs4773646	0.86[ASN][1000 genomes]
rs501622	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs516061	0.95[ASN][1000 genomes]
rs525661	0.97[ASN][1000 genomes]
rs547159	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs548677	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9523402	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv562718	chr13:92366257-92399564	Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv1120	chr13:92372733-92400616	Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv527713	chr13:92383193-92390297	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv1804357	chr13:92383193-92391070	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv1806439	chr13:92383193-92392002	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv3520330	chr13:92385151-92390649	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3520341	chr13:92385151-92390649	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3519464	chr13:92385251-92393599	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv3519462	chr13:92385601-92393249	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv3519330	chr13:92385963-92392598	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	esv3519341	chr13:92385963-92392598	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv3519467	chr13:92386064-92392477	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv3519465	chr13:92386097-92392478	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv3519461	chr13:92386146-92392419	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	esv3519466	chr13:92386227-92392452	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	nsv498819	chr13:92386317-92392370	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	esv3519468	chr13:92386318-92392370	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	esv17081	chr13:92386548-92392301	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
27	nsv514715	chr13:92387175-92391471	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
28	esv3693154	chr13:92387661-92390297	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv1805705	chr13:92387661-92392002	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
30	esv1805901	chr13:92387661-92392002	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
31	esv1807050	chr13:92387661-92392002	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
32	esv1809422	chr13:92387661-92392002	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
33	esv1813654	chr13:92387661-92392002	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
34	esv1814672	chr13:92387661-92392002	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92383000-92419400	Weak transcription	Hela-S3	cervix

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