Variant report

Variant	rs9523402
Chromosome Location	chr13:92381450-92381451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:92348342..92351314-chr13:92379204..92381548,2	K562	blood:
2	chr13:92357827..92359421-chr13:92380586..92382963,2	K562	blood:
3	chr13:91998613..92001393-chr13:92380186..92381760,2	K562	blood:
4	chr13:92009230..92011038-chr13:92380409..92382263,2	K562	blood:
5	chr13:92011474..92015304-chr13:92379938..92384751,4	K562	blood:
6	chr13:92360463..92365110-chr13:92381034..92383845,4	K562	blood:
7	chr13:92042645..92045242-chr13:92380506..92382090,2	K562	blood:
8	chr13:92011474..92014177-chr13:92380431..92383913,3	K562	blood:
9	chr13:92376837..92379640-chr13:92380146..92383105,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179399	Chromatin interaction
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1332092	0.86[CHB][hapmap]
rs1332095	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs163729	0.84[ASN][1000 genomes]
rs163934	0.81[ASN][1000 genomes]
rs163935	0.81[ASN][1000 genomes]
rs168218	0.90[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs171060	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs1847713	0.86[CHB][hapmap]
rs1854980	0.86[CHB][hapmap]
rs189337	0.90[CHB][hapmap];0.97[CHD][hapmap];0.85[ASN][1000 genomes]
rs1999231	0.86[CHB][hapmap]
rs2065193	0.81[CHB][hapmap]
rs2174504	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs342697	0.90[CHB][hapmap]
rs342709	0.90[CHB][hapmap]
rs342711	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs342712	0.84[ASN][1000 genomes]
rs342713	0.84[ASN][1000 genomes]
rs342714	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs342715	0.90[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs342716	0.90[CHB][hapmap]
rs342717	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs342718	0.90[CHB][hapmap];0.94[CHD][hapmap];0.81[ASN][1000 genomes]
rs342719	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs345471	0.89[CHB][hapmap]
rs345477	0.90[CHB][hapmap]
rs345482	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs345485	0.81[ASN][1000 genomes]
rs3783054	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs3864180	0.85[CHB][hapmap]
rs4771843	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4771844	0.86[CHB][hapmap]
rs4773646	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4773648	0.84[CHB][hapmap]
rs501622	0.83[ASN][1000 genomes]
rs525661	0.90[CHB][hapmap];0.97[CHD][hapmap]
rs9301750	0.89[CHB][hapmap]
rs9301754	0.86[CHB][hapmap]
rs9515967	0.86[CHB][hapmap]
rs9515968	0.81[CHB][hapmap]
rs9515971	0.86[CHB][hapmap]
rs9515980	0.86[CHB][hapmap]
rs9515981	0.86[CHB][hapmap]
rs9523404	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs9523407	0.86[CHB][hapmap]
rs9523410	0.86[CHB][hapmap]
rs9523412	0.80[CHB][hapmap]
rs9523424	0.86[CHB][hapmap]
rs9523440	0.81[CHB][hapmap]
rs9560849	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv562718	chr13:92366257-92399564	Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv1120	chr13:92372733-92400616	Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92377600-92382400	Weak transcription	Hela-S3	cervix

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