Variant report

Variant	rs342697
Chromosome Location	chr13:92428976-92428977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:92007575..92011337-chr13:92428230..92431057,3	K562	blood:
2	chr13:91999549..92001296-chr13:92427143..92429211,2	K562	blood:
3	chr13:92172090..92174272-chr13:92427047..92429964,2	K562	blood:

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1332092	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs1332095	0.81[CHB][hapmap]
rs1445397	0.85[ASN][1000 genomes]
rs1505565	0.88[CHB][hapmap]
rs163928	0.87[EUR][1000 genomes]
rs168218	0.81[CHB][hapmap]
rs171060	0.81[CHB][hapmap]
rs1847713	0.95[CHB][hapmap];0.94[CHD][hapmap]
rs1854975	0.82[ASN][1000 genomes]
rs1854980	0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.82[ASN][1000 genomes]
rs1854981	0.82[ASN][1000 genomes]
rs189337	0.81[CHB][hapmap]
rs1999231	0.95[CHB][hapmap]
rs2065193	0.90[CHB][hapmap]
rs2148531	0.80[ASN][1000 genomes]
rs2174504	0.90[CHB][hapmap];0.89[CHD][hapmap]
rs2183865	0.83[ASN][1000 genomes]
rs2352191	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2989989	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs342698	0.91[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs342699	0.83[EUR][1000 genomes]
rs342700	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs342703	0.91[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs342709	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs342711	0.81[CHB][hapmap]
rs342714	0.81[CHB][hapmap]
rs342715	0.81[CHB][hapmap]
rs342716	0.81[CHB][hapmap]
rs342717	0.81[CHB][hapmap]
rs342718	0.81[CHB][hapmap]
rs342719	0.81[CHB][hapmap]
rs345471	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs345477	0.81[CHB][hapmap]
rs345482	0.81[CHB][hapmap]
rs3783054	0.95[CHB][hapmap];0.97[CHD][hapmap]
rs3864180	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs463056	0.83[EUR][1000 genomes]
rs472095	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4771843	0.95[CHB][hapmap]
rs4771844	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4773648	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs481064	0.88[EUR][1000 genomes]
rs483826	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs505246	0.83[EUR][1000 genomes]
rs525661	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs7489587	0.82[ASN][1000 genomes]
rs7982606	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7984514	0.90[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap]
rs7984987	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7985482	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7992519	0.90[CHB][hapmap]
rs7993839	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7994873	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs8000830	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs9301750	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs9301751	0.83[ASN][1000 genomes]
rs9301753	0.82[ASN][1000 genomes]
rs9301754	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs9515967	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs9515968	0.90[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9515971	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs9515980	0.95[CHB][hapmap]
rs9515981	0.95[CHB][hapmap];0.94[CHD][hapmap]
rs9523402	0.90[CHB][hapmap]
rs9523404	0.94[CHB][hapmap]
rs9523407	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs9523408	0.84[ASN][1000 genomes]
rs9523410	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.85[ASN][1000 genomes]
rs9523412	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs9523413	0.83[ASN][1000 genomes]
rs9523417	0.82[ASN][1000 genomes]
rs9523424	0.95[CHB][hapmap];0.94[CHD][hapmap]
rs9523440	0.90[CHB][hapmap]
rs9556124	0.90[CHB][hapmap]
rs9560849	0.95[CHB][hapmap];0.86[CHD][hapmap]
rs9560854	0.85[ASN][1000 genomes]
rs9560870	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs9560873	0.90[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv524271	chr13:92419769-92501664	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv562720	chr13:92419769-92501664	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1036226	chr13:92421721-92501284	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1053048	chr13:92421721-92501558	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1053597	chr13:92421721-92502205	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92427200-92429000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:92428800-92429400	Enhancers	Fetal Intestine Large	intestine

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