Variant report

Variant	rs2352191
Chromosome Location	chr13:92539702-92539703
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12431259	0.81[CHB][hapmap]
rs1332092	0.86[CHB][hapmap]
rs171060	0.80[CHB][hapmap]
rs17668748	0.80[CHB][hapmap]
rs1847713	0.86[CHB][hapmap]
rs1854980	0.86[CHB][hapmap]
rs1999231	0.86[CHB][hapmap]
rs2065193	0.91[CHB][hapmap]
rs2174504	0.80[CHB][hapmap]
rs342697	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs342709	0.91[CHB][hapmap]
rs342711	0.80[CHB][hapmap]
rs342714	0.80[CHB][hapmap]
rs342716	0.80[CHB][hapmap]
rs342717	0.80[CHB][hapmap]
rs342719	0.80[CHB][hapmap]
rs345471	0.89[CHB][hapmap]
rs345477	0.80[CHB][hapmap]
rs345482	0.80[CHB][hapmap]
rs3783054	0.85[CHB][hapmap]
rs3864180	0.85[CHB][hapmap]
rs4771843	0.86[CHB][hapmap]
rs4771844	0.86[CHB][hapmap]
rs4773648	0.90[CHB][hapmap]
rs7320766	0.80[CHB][hapmap]
rs7982606	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7984514	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7984987	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7985482	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7992519	1.00[CHB][hapmap]
rs7993839	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7994873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000830	1.00[CHB][hapmap]
rs9301750	0.89[CHB][hapmap]
rs9301754	0.86[CHB][hapmap]
rs9515967	0.86[CHB][hapmap]
rs9515968	0.82[CHB][hapmap]
rs9515971	0.86[CHB][hapmap]
rs9515980	0.86[CHB][hapmap]
rs9515981	0.86[CHB][hapmap]
rs9523404	0.84[CHB][hapmap]
rs9523407	0.86[CHB][hapmap]
rs9523410	0.86[CHB][hapmap]
rs9523412	0.85[CHB][hapmap]
rs9523424	0.86[CHB][hapmap]
rs9523440	0.90[CHB][hapmap]
rs9556124	1.00[CHB][hapmap]
rs9556125	0.81[CHB][hapmap]
rs9556131	0.80[CHB][hapmap]
rs9560849	0.95[CHB][hapmap]
rs9560870	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs9560873	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs9560875	0.80[CHB][hapmap]
rs9560880	0.81[CHB][hapmap]
rs9560882	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9560883	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562721	chr13:92476602-92548841	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
3	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92538400-92543400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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