Variant report

Variant	rs7993839
Chromosome Location	chr13:92505786-92505787
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11839974	0.85[CEU][hapmap];0.84[YRI][hapmap];0.80[EUR][1000 genomes]
rs12431259	0.81[CHB][hapmap]
rs1332092	0.86[CHB][hapmap]
rs16946808	0.85[CEU][hapmap];0.84[YRI][hapmap]
rs16946850	0.85[YRI][hapmap]
rs16951984	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs171060	0.81[CHB][hapmap]
rs17668748	0.81[CHB][hapmap]
rs1847713	0.86[CHB][hapmap]
rs1854974	0.85[CEU][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs1854980	0.86[CHB][hapmap]
rs1999231	0.86[CHB][hapmap]
rs2065193	0.91[CHB][hapmap]
rs2174504	0.80[CHB][hapmap]
rs2352191	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs342697	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs342698	0.80[YRI][hapmap]
rs342700	0.82[YRI][hapmap]
rs342709	0.91[CHB][hapmap]
rs342711	0.81[CHB][hapmap]
rs342714	0.80[CHB][hapmap]
rs342716	0.81[CHB][hapmap]
rs342717	0.81[CHB][hapmap]
rs342719	0.81[CHB][hapmap]
rs345471	0.89[CHB][hapmap]
rs345477	0.81[CHB][hapmap]
rs345482	0.81[CHB][hapmap]
rs3783054	0.86[CHB][hapmap]
rs3864180	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4771843	0.86[CHB][hapmap]
rs4771844	0.86[CHB][hapmap]
rs4773648	0.90[CHB][hapmap]
rs481064	0.82[YRI][hapmap]
rs548544	0.85[YRI][hapmap]
rs61967085	0.80[EUR][1000 genomes]
rs6492561	0.85[YRI][hapmap]
rs7320766	0.81[CHB][hapmap]
rs7328464	0.85[YRI][hapmap]
rs7982606	0.90[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs7984514	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7984987	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7985482	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs7986445	0.86[YRI][hapmap]
rs7992519	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7994873	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs7996272	0.80[YRI][hapmap]
rs7996921	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs7997028	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8000830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs8001076	0.80[EUR][1000 genomes]
rs9301750	0.89[CHB][hapmap]
rs9301754	0.86[CHB][hapmap]
rs9515967	0.86[CHB][hapmap]
rs9515968	0.82[CHB][hapmap]
rs9515971	0.86[CHB][hapmap]
rs9515980	0.86[CHB][hapmap]
rs9515981	0.86[CHB][hapmap]
rs9523404	0.84[CHB][hapmap]
rs9523407	0.86[CHB][hapmap]
rs9523410	0.86[CHB][hapmap]
rs9523412	0.81[CHB][hapmap]
rs9523424	0.86[CHB][hapmap]
rs9523440	0.90[CHB][hapmap]
rs9556124	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs9556125	0.81[CHB][hapmap]
rs9556131	0.81[CHB][hapmap]
rs9560849	0.95[CHB][hapmap]
rs9560870	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs9560873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9560875	0.81[CHB][hapmap]
rs9560880	0.81[CHB][hapmap]
rs9560882	0.89[ASN][1000 genomes]
rs9560883	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv562721	chr13:92476602-92548841	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
9	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv983612	chr13:92492782-92519967	Enhancers	lncRNA	n/a	inside rSNPs	diseases
11	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
12	nsv1041361	chr13:92495093-92519488	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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