Variant report

Variant	rs17668748
Chromosome Location	chr13:92501540-92501541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12050058	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12430247	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12430256	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12431259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1330472	0.95[CHB][hapmap]
rs1394888	0.85[CHB][hapmap]
rs1411518	1.00[CEU][hapmap]
rs1412313	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1505565	0.88[CHB][hapmap]
rs173141	0.88[CHB][hapmap]
rs17668312	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1827755	0.85[CHB][hapmap]
rs1831564	0.85[CHB][hapmap]
rs1847717	0.82[CHB][hapmap]
rs193208	0.89[CHB][hapmap]
rs1988500	0.85[CHB][hapmap]
rs2352028	0.90[CHB][hapmap];0.96[CHD][hapmap]
rs2352029	0.94[CHB][hapmap];0.96[CHD][hapmap]
rs2352191	0.80[CHB][hapmap]
rs2352202	0.85[CHB][hapmap]
rs2938868	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs2938869	0.89[CHB][hapmap]
rs2938874	0.90[CHB][hapmap]
rs2989995	0.94[CHB][hapmap]
rs2990004	0.90[CHB][hapmap]
rs2990007	0.90[CHB][hapmap];0.96[CHD][hapmap]
rs342706	0.90[CHB][hapmap];0.96[CHD][hapmap]
rs400118	0.94[CHB][hapmap]
rs4356343	1.00[CEU][hapmap]
rs464160	0.89[CHB][hapmap]
rs528366	0.90[CHB][hapmap];0.96[CHD][hapmap]
rs535973	0.90[CHB][hapmap];0.96[CHD][hapmap]
rs57676883	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58499122	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58505971	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58932811	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59464246	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60993910	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6492566	1.00[CEU][hapmap]
rs72647267	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7320766	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs7335006	1.00[CEU][hapmap]
rs7981451	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7983944	1.00[CEU][hapmap]
rs7984514	0.81[CHB][hapmap]
rs7984987	0.81[CHB][hapmap]
rs7985030	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7985482	0.80[CHB][hapmap]
rs7986027	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs7987852	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7992519	0.80[CHB][hapmap]
rs7992535	1.00[CEU][hapmap]
rs7993839	0.81[CHB][hapmap]
rs7994873	0.81[CHB][hapmap]
rs7997428	0.95[CHB][hapmap];0.96[CHD][hapmap]
rs9515975	0.85[CHB][hapmap]
rs9556115	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556116	0.91[ASN][1000 genomes]
rs9556119	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556120	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556125	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9560852	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9560853	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9560856	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9560860	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9560861	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9560865	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9560868	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs9560869	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs9560874	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9560875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9560880	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs9560883	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs9589358	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs9589396	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv524271	chr13:92419769-92501664	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv562720	chr13:92419769-92501664	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1053048	chr13:92421721-92501558	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1053597	chr13:92421721-92502205	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv562721	chr13:92476602-92548841	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
13	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv983612	chr13:92492782-92519967	Enhancers	lncRNA	n/a	inside rSNPs	diseases
15	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
16	nsv1041361	chr13:92495093-92519488	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links