Variant report
| Variant | rs9589396 |
|---|---|
| Chromosome Location | chr13:92651857-92651858 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1411518 | 1.00[CEU][hapmap];0.91[YRI][hapmap] |
| rs17668748 | 1.00[CEU][hapmap] |
| rs1887118 | 1.00[CEU][hapmap] |
| rs4356343 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55712417 | 1.00[EUR][1000 genomes] |
| rs6492566 | 1.00[CEU][hapmap] |
| rs67176352 | 1.00[EUR][1000 genomes] |
| rs67682141 | 1.00[EUR][1000 genomes] |
| rs72633736 | 1.00[EUR][1000 genomes] |
| rs72633742 | 1.00[EUR][1000 genomes] |
| rs7335006 | 1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7335305 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73612907 | 1.00[EUR][1000 genomes] |
| rs7983944 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7986027 | 1.00[CEU][hapmap] |
| rs7992535 | 1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8002200 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9560875 | 1.00[CEU][hapmap] |
| rs9589358 | 1.00[CEU][hapmap] |
| rs9589390 | 0.91[YRI][hapmap] |
| rs9589391 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3378326 | chr13:92445514-92816367 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv562722 | chr13:92607374-92733984 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv900887 | chr13:92651148-92745416 | Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv900888 | chr13:92651148-92748938 | Enhancers Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv900889 | chr13:92651148-92772499 | Enhancers Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv900890 | chr13:92651148-92808689 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
