Variant report

Variant	rs9589358
Chromosome Location	chr13:92496197-92496198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs12050058	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12430247	0.95[ASN][1000 genomes]
rs12430256	0.95[ASN][1000 genomes]
rs12431259	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap]
rs1330472	0.84[CHB][hapmap]
rs1394888	0.95[CHB][hapmap]
rs1411518	1.00[CEU][hapmap]
rs1412313	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1505565	0.94[CHB][hapmap]
rs173141	1.00[CHB][hapmap]
rs17668312	1.00[CEU][hapmap];0.85[ASN][1000 genomes]
rs17668748	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs1827755	0.95[CHB][hapmap]
rs1831564	0.95[CHB][hapmap]
rs1847717	0.94[CHB][hapmap]
rs193208	1.00[CHB][hapmap]
rs1988500	0.95[CHB][hapmap]
rs2352028	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs2352029	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs2352202	0.95[CHB][hapmap]
rs2938868	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs2938869	1.00[CHB][hapmap]
rs2938874	1.00[CHB][hapmap]
rs2989995	1.00[CHB][hapmap]
rs2990004	1.00[CHB][hapmap]
rs2990007	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs342706	1.00[CHB][hapmap];0.96[CHD][hapmap];0.80[ASN][1000 genomes]
rs3864180	0.81[CHB][hapmap]
rs400118	1.00[CHB][hapmap]
rs4356343	1.00[CEU][hapmap]
rs464160	1.00[CHB][hapmap]
rs528366	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs535973	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs57676883	0.95[ASN][1000 genomes]
rs58499122	0.92[ASN][1000 genomes]
rs58505971	0.94[ASN][1000 genomes]
rs58932811	0.92[ASN][1000 genomes]
rs59464246	0.95[ASN][1000 genomes]
rs60993910	0.95[ASN][1000 genomes]
rs6492566	1.00[CEU][hapmap]
rs72647267	0.95[ASN][1000 genomes]
rs7320766	0.90[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs7335006	1.00[CEU][hapmap]
rs7981451	0.94[ASN][1000 genomes]
rs7983944	1.00[CEU][hapmap]
rs7985030	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7986027	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs7987852	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs7992535	1.00[CEU][hapmap]
rs7997428	0.95[CHB][hapmap];0.96[CHD][hapmap]
rs9515975	0.95[CHB][hapmap]
rs9556115	0.90[ASN][1000 genomes]
rs9556116	0.90[ASN][1000 genomes]
rs9556119	0.92[ASN][1000 genomes]
rs9556120	0.95[ASN][1000 genomes]
rs9556125	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9560852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9560853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9560856	0.90[ASN][1000 genomes]
rs9560860	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9560861	0.91[ASN][1000 genomes]
rs9560865	0.95[ASN][1000 genomes]
rs9560868	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs9560869	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap]
rs9560874	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs9560875	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap]
rs9560880	0.90[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9560883	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs9589396	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv524271	chr13:92419769-92501664	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv562720	chr13:92419769-92501664	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1036226	chr13:92421721-92501284	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1053048	chr13:92421721-92501558	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1053597	chr13:92421721-92502205	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv562721	chr13:92476602-92548841	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
14	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv983612	chr13:92492782-92519967	Enhancers	lncRNA	n/a	inside rSNPs	diseases
16	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
17	nsv1041361	chr13:92495093-92519488	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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