Variant report

Variant	rs9560869
Chromosome Location	chr13:92510221-92510222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs12050058	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12430247	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12430256	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12431259	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1330472	0.94[CHB][hapmap]
rs1394888	0.84[CHB][hapmap]
rs1411518	1.00[CEU][hapmap]
rs1412313	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1505565	0.86[CHB][hapmap]
rs173141	0.88[CHB][hapmap]
rs17668312	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17668748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs1827755	0.84[CHB][hapmap]
rs1831564	0.84[CHB][hapmap]
rs1847717	0.88[CHB][hapmap]
rs193208	0.88[CHB][hapmap]
rs1988500	0.84[CHB][hapmap]
rs2352028	0.89[CHB][hapmap]
rs2352029	0.94[CHB][hapmap]
rs2352202	0.84[CHB][hapmap]
rs2938868	0.89[CHB][hapmap]
rs2938869	0.89[CHB][hapmap]
rs2938874	0.89[CHB][hapmap]
rs2989995	0.94[CHB][hapmap]
rs2990004	0.89[CHB][hapmap]
rs2990007	0.89[CHB][hapmap]
rs342706	0.89[CHB][hapmap]
rs400118	0.94[CHB][hapmap]
rs464160	0.89[CHB][hapmap]
rs528366	0.89[CHB][hapmap]
rs535973	0.89[CHB][hapmap]
rs57676883	0.94[ASN][1000 genomes]
rs58499122	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58505971	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58932811	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59464246	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60993910	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6492566	1.00[CEU][hapmap]
rs72647267	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7320766	1.00[CHB][hapmap]
rs7981451	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7985030	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7985844	1.00[CEU][hapmap]
rs7986027	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap]
rs7987852	1.00[CHB][hapmap]
rs7997428	0.94[CHB][hapmap]
rs9515975	0.84[CHB][hapmap]
rs9556115	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556116	0.93[ASN][1000 genomes]
rs9556119	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556120	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556125	1.00[CHB][hapmap]
rs9560852	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9560853	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9560856	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9560860	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9560861	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9560865	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9560868	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs9560874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9560875	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9560880	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs9560883	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs9589358	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv562721	chr13:92476602-92548841	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv983612	chr13:92492782-92519967	Enhancers	lncRNA	n/a	inside rSNPs	diseases
9	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv1041361	chr13:92495093-92519488	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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