Variant report

Variant	rs9560880
Chromosome Location	chr13:92538880-92538881
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs12050058	0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12430247	0.88[ASN][1000 genomes]
rs12430256	0.88[ASN][1000 genomes]
rs12431259	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1330472	0.95[CHB][hapmap]
rs1394888	0.85[CHB][hapmap]
rs1412313	0.95[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs1505565	0.88[CHB][hapmap]
rs173141	0.89[CHB][hapmap]
rs17668748	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1827755	0.85[CHB][hapmap]
rs1831564	0.85[CHB][hapmap]
rs1847717	0.83[CHB][hapmap]
rs193208	0.90[CHB][hapmap]
rs1988500	0.85[CHB][hapmap]
rs2352028	0.90[CHB][hapmap]
rs2352029	0.94[CHB][hapmap]
rs2352191	0.81[CHB][hapmap]
rs2352202	0.85[CHB][hapmap]
rs2938868	0.90[CHB][hapmap]
rs2938869	0.90[CHB][hapmap]
rs2938874	0.90[CHB][hapmap]
rs2989995	0.94[CHB][hapmap]
rs2990004	0.90[CHB][hapmap]
rs2990007	0.90[CHB][hapmap]
rs342706	0.90[CHB][hapmap]
rs400118	0.94[CHB][hapmap]
rs464160	0.90[CHB][hapmap]
rs528366	0.90[CHB][hapmap]
rs535973	0.90[CHB][hapmap]
rs57676883	0.88[ASN][1000 genomes]
rs58499122	0.85[ASN][1000 genomes]
rs58505971	0.87[ASN][1000 genomes]
rs58932811	0.85[ASN][1000 genomes]
rs59464246	0.88[ASN][1000 genomes]
rs60993910	0.88[ASN][1000 genomes]
rs72647267	0.88[ASN][1000 genomes]
rs7320766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7981451	0.87[ASN][1000 genomes]
rs7984514	0.81[CHB][hapmap]
rs7984987	0.81[CHB][hapmap]
rs7985030	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7985482	0.81[CHB][hapmap]
rs7986027	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs7987852	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7992519	0.81[CHB][hapmap]
rs7993839	0.81[CHB][hapmap]
rs7994873	0.81[CHB][hapmap]
rs7997428	0.95[CHB][hapmap]
rs8000830	0.81[CHB][hapmap]
rs9515975	0.85[CHB][hapmap]
rs9556115	0.83[ASN][1000 genomes]
rs9556116	0.83[ASN][1000 genomes]
rs9556119	0.84[ASN][1000 genomes]
rs9556120	0.88[ASN][1000 genomes]
rs9556124	0.80[CHB][hapmap]
rs9556125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9560852	0.94[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs9560853	0.94[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs9560856	0.83[ASN][1000 genomes]
rs9560860	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs9560861	0.83[ASN][1000 genomes]
rs9560865	0.88[ASN][1000 genomes]
rs9560868	0.94[CHB][hapmap]
rs9560869	1.00[CHB][hapmap]
rs9560870	0.81[CHB][hapmap]
rs9560873	0.81[CHB][hapmap]
rs9560874	1.00[CHB][hapmap]
rs9560875	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9560883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9589358	0.90[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562721	chr13:92476602-92548841	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
3	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92538400-92543400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links