Variant report

Variant	rs7986027
Chromosome Location	chr13:92456936-92456937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92013065..92015045-chr13:92455620..92457213,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12050058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12431259	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs1330472	0.89[CHB][hapmap]
rs1394888	0.90[CHB][hapmap]
rs1411518	1.00[CEU][hapmap]
rs1412313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1505565	0.94[CHB][hapmap]
rs173141	0.94[CHB][hapmap]
rs17668312	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17668748	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs1827755	0.90[CHB][hapmap]
rs1831564	0.90[CHB][hapmap]
rs1847717	0.88[CHB][hapmap]
rs193208	0.94[CHB][hapmap]
rs1988500	0.90[CHB][hapmap]
rs2352028	0.95[CHB][hapmap];0.96[CHD][hapmap]
rs2352029	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs2352202	0.90[CHB][hapmap]
rs2938868	0.95[CHB][hapmap];0.92[CHD][hapmap]
rs2938869	0.94[CHB][hapmap]
rs2938874	0.95[CHB][hapmap]
rs2989995	1.00[CHB][hapmap]
rs2990004	0.95[CHB][hapmap]
rs2990007	0.95[CHB][hapmap];0.96[CHD][hapmap]
rs342706	0.95[CHB][hapmap];0.96[CHD][hapmap]
rs400118	0.94[CHB][hapmap]
rs4356343	1.00[CEU][hapmap]
rs464160	0.94[CHB][hapmap]
rs528366	0.95[CHB][hapmap];0.96[CHD][hapmap]
rs535973	0.95[CHB][hapmap];0.96[CHD][hapmap]
rs6492566	1.00[CEU][hapmap]
rs7320766	0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs7335006	1.00[CEU][hapmap]
rs7983944	1.00[CEU][hapmap]
rs7985030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7987852	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs7992535	1.00[CEU][hapmap]
rs7997428	0.89[CHB][hapmap];0.88[CHD][hapmap]
rs9515975	0.90[CHB][hapmap]
rs9556125	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9560849	0.81[CHB][hapmap]
rs9560852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9560853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9560860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9560868	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9560869	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap]
rs9560874	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap]
rs9560875	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9560880	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs9560883	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9589358	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs9589396	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv524271	chr13:92419769-92501664	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv562720	chr13:92419769-92501664	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1036226	chr13:92421721-92501284	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1053048	chr13:92421721-92501558	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1053597	chr13:92421721-92502205	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv1800684	chr13:92450566-92460111	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92456200-92458000	Enhancers	Fetal Heart	heart
2	chr13:92456400-92457400	Enhancers	Rectal Smooth Muscle	rectum
3	chr13:92456600-92458000	Enhancers	Fetal Lung	lung
4	chr13:92456800-92457000	Enhancers	Placenta Amnion	Placenta Amnion

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