Variant report
| Variant | rs7997428 |
|---|---|
| Chromosome Location | chr13:92537726-92537727 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs12050058 | 0.89[CHB][hapmap] |
| rs12431259 | 0.95[CHB][hapmap] |
| rs1330472 | 0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1394888 | 0.90[CHB][hapmap] |
| rs1412313 | 0.89[CHB][hapmap] |
| rs1505565 | 0.88[CHB][hapmap] |
| rs173141 | 0.94[CHB][hapmap] |
| rs17668748 | 0.95[CHB][hapmap];0.96[CHD][hapmap] |
| rs1827755 | 0.90[CHB][hapmap] |
| rs1831564 | 0.90[CHB][hapmap] |
| rs1847717 | 0.88[CHB][hapmap] |
| rs1929922 | 0.80[ASN][1000 genomes] |
| rs193208 | 0.94[CHB][hapmap];0.83[JPT][hapmap] |
| rs1988500 | 0.90[CHB][hapmap] |
| rs2352028 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.91[MEX][hapmap] |
| rs2352029 | 0.94[CHB][hapmap];0.92[CHD][hapmap];0.91[MEX][hapmap] |
| rs2352202 | 0.90[CHB][hapmap] |
| rs2938868 | 0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[MEX][hapmap];0.80[ASN][1000 genomes] |
| rs2938869 | 0.94[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs2938874 | 0.95[CHB][hapmap] |
| rs2989995 | 0.94[CHB][hapmap] |
| rs2990004 | 0.95[CHB][hapmap] |
| rs2990007 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.91[MEX][hapmap] |
| rs342706 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs400118 | 1.00[CHB][hapmap] |
| rs464160 | 0.94[CHB][hapmap] |
| rs528366 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.91[MEX][hapmap] |
| rs535973 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.91[MEX][hapmap] |
| rs7320766 | 0.95[CHB][hapmap];1.00[CHD][hapmap] |
| rs7985030 | 0.89[CHB][hapmap] |
| rs7986027 | 0.89[CHB][hapmap];0.88[CHD][hapmap] |
| rs7987852 | 0.94[CHB][hapmap] |
| rs9515975 | 0.90[CHB][hapmap] |
| rs9556125 | 1.00[CHB][hapmap] |
| rs9560852 | 0.94[CHB][hapmap] |
| rs9560853 | 0.94[CHB][hapmap] |
| rs9560860 | 0.89[CHB][hapmap] |
| rs9560868 | 0.88[CHB][hapmap] |
| rs9560869 | 0.94[CHB][hapmap] |
| rs9560874 | 0.94[CHB][hapmap] |
| rs9560875 | 0.95[CHB][hapmap];1.00[CHD][hapmap] |
| rs9560880 | 0.95[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs9560883 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs9589358 | 0.95[CHB][hapmap];0.96[CHD][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3378326 | chr13:92445514-92816367 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv562721 | chr13:92476602-92548841 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv900883 | chr13:92481236-92602622 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv976142 | chr13:92492782-92567759 | Weak transcription Enhancers Flanking Active TSS Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
