Variant report

Variant	rs9523404
Chromosome Location	chr13:92403823-92403824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:91751937..91754836-chr13:92403757..92406157,2	K562	blood:
2	chr13:91998861..92002320-chr13:92401381..92405193,3	K562	blood:
3	chr13:92402109..92404912-chr13:92406089..92408172,3	K562	blood:

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1332092	1.00[CHB][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1394888	0.84[CHB][hapmap]
rs1445397	0.91[ASN][1000 genomes]
rs1505564	0.81[ASN][1000 genomes]
rs1505565	0.93[CHB][hapmap]
rs1550780	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1555916	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16946689	0.86[ASN][1000 genomes]
rs173141	0.82[JPT][hapmap]
rs1813966	0.82[ASN][1000 genomes]
rs1827755	0.84[CHB][hapmap]
rs1831564	0.84[CHB][hapmap]
rs1847713	1.00[CHB][hapmap]
rs1854970	0.82[ASN][1000 genomes]
rs1854975	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1854980	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1854981	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1854986	0.81[ASN][1000 genomes]
rs1988500	0.84[CHB][hapmap]
rs1999231	1.00[CHB][hapmap]
rs2065193	0.95[CHB][hapmap]
rs2148531	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2174504	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2183865	0.93[ASN][1000 genomes]
rs2352191	0.84[CHB][hapmap]
rs2352202	0.84[CHB][hapmap]
rs342697	0.94[CHB][hapmap]
rs342709	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs345471	0.94[CHB][hapmap];0.91[ASN][1000 genomes]
rs3783054	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3864180	1.00[CHB][hapmap]
rs4771843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4771844	1.00[CHB][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4773648	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs57883840	0.86[ASN][1000 genomes]
rs60753954	0.86[ASN][1000 genomes]
rs61967075	0.85[ASN][1000 genomes]
rs7489587	0.89[ASN][1000 genomes]
rs7982606	0.89[CHB][hapmap]
rs7984514	0.84[CHB][hapmap]
rs7984987	0.84[CHB][hapmap]
rs7985482	0.84[CHB][hapmap]
rs7992519	0.84[CHB][hapmap]
rs7993839	0.84[CHB][hapmap]
rs7994873	0.84[CHB][hapmap]
rs8000830	0.84[CHB][hapmap]
rs9301750	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs9301751	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9301753	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9301754	1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9515966	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9515967	1.00[CHB][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9515968	0.94[CHB][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9515971	1.00[CHB][hapmap];0.80[YRI][hapmap];0.93[ASN][1000 genomes]
rs9515974	0.86[ASN][1000 genomes]
rs9515975	0.84[CHB][hapmap]
rs9515976	0.81[ASN][1000 genomes]
rs9515977	0.81[ASN][1000 genomes]
rs9515980	1.00[CHB][hapmap]
rs9515981	1.00[CHB][hapmap]
rs9523402	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs9523405	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523407	1.00[CHB][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9523408	0.92[ASN][1000 genomes]
rs9523410	1.00[CHB][hapmap];0.80[YRI][hapmap];0.91[ASN][1000 genomes]
rs9523412	0.89[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs9523413	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9523417	0.89[ASN][1000 genomes]
rs9523418	0.86[ASN][1000 genomes]
rs9523424	1.00[CHB][hapmap]
rs9523440	0.94[CHB][hapmap]
rs9556124	0.83[CHB][hapmap]
rs9560847	0.86[ASN][1000 genomes]
rs9560848	0.86[ASN][1000 genomes]
rs9560849	0.89[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs9560850	0.85[ASN][1000 genomes]
rs9560851	0.85[ASN][1000 genomes]
rs9560854	0.91[ASN][1000 genomes]
rs9560870	0.84[CHB][hapmap]
rs9560873	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92383000-92419400	Weak transcription	Hela-S3	cervix
2	chr13:92403600-92404000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:92403600-92404000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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