Variant report

Variant	rs1550780
Chromosome Location	chr13:92408129-92408130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:92401398..92403609-chr13:92406672..92409207,2	K562	blood:
2	chr13:92402109..92404912-chr13:92406089..92408172,3	K562	blood:
3	chr13:92397745..92400053-chr13:92406336..92408253,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1332092	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1332093	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1445397	0.92[ASN][1000 genomes]
rs1505564	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1555916	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16946689	0.84[ASN][1000 genomes]
rs1813966	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1847713	0.82[EUR][1000 genomes]
rs1854970	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1854975	0.89[ASN][1000 genomes]
rs1854980	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1854981	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1854986	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2148531	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2174504	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2183865	0.91[ASN][1000 genomes]
rs342709	0.87[ASN][1000 genomes]
rs345471	0.92[ASN][1000 genomes]
rs3783054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4495989	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4771843	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4771844	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4773648	0.91[ASN][1000 genomes]
rs57883840	0.84[ASN][1000 genomes]
rs60753954	0.84[ASN][1000 genomes]
rs61967075	0.83[ASN][1000 genomes]
rs7489587	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9301750	0.91[ASN][1000 genomes]
rs9301751	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9301753	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9301754	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9515966	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9515967	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9515968	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9515971	0.91[ASN][1000 genomes]
rs9515974	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9515976	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9515977	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9515978	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9515980	0.80[ASN][1000 genomes]
rs9523404	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9523405	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9523407	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9523408	0.91[ASN][1000 genomes]
rs9523410	0.92[ASN][1000 genomes]
rs9523412	0.92[ASN][1000 genomes]
rs9523413	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9523417	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9523418	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523424	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9560847	0.84[ASN][1000 genomes]
rs9560848	0.84[ASN][1000 genomes]
rs9560849	0.86[ASN][1000 genomes]
rs9560850	0.86[ASN][1000 genomes]
rs9560851	0.86[ASN][1000 genomes]
rs9560854	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92383000-92419400	Weak transcription	Hela-S3	cervix

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