Variant report

Variant	rs9560854
Chromosome Location	chr13:92429141-92429142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:92007575..92011337-chr13:92428230..92431057,3	K562	blood:
2	chr13:91999549..92001296-chr13:92427143..92429211,2	K562	blood:
3	chr13:92172090..92174272-chr13:92427047..92429964,2	K562	blood:

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12865389	0.85[ASN][1000 genomes]
rs1332092	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1332093	0.87[ASN][1000 genomes]
rs1445396	0.83[EUR][1000 genomes]
rs1445397	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505564	0.89[ASN][1000 genomes]
rs1537026	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1542158	0.82[EUR][1000 genomes]
rs1550780	0.92[ASN][1000 genomes]
rs1555916	0.93[ASN][1000 genomes]
rs1813966	0.90[ASN][1000 genomes]
rs1847713	0.87[ASN][1000 genomes]
rs1854970	0.90[ASN][1000 genomes]
rs1854975	0.97[ASN][1000 genomes]
rs1854980	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1854981	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1854986	0.89[ASN][1000 genomes]
rs2148531	0.95[ASN][1000 genomes]
rs2174504	0.93[ASN][1000 genomes]
rs2183865	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs342697	0.85[ASN][1000 genomes]
rs342709	0.91[ASN][1000 genomes]
rs345471	0.87[ASN][1000 genomes]
rs3783054	0.93[ASN][1000 genomes]
rs4495989	0.87[ASN][1000 genomes]
rs4771843	0.91[ASN][1000 genomes]
rs4771844	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4773648	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7489587	0.97[ASN][1000 genomes]
rs9301750	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9301751	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9301753	0.97[ASN][1000 genomes]
rs9301754	0.97[ASN][1000 genomes]
rs9515966	0.94[ASN][1000 genomes]
rs9515967	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9515968	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9515971	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9515974	0.94[ASN][1000 genomes]
rs9515976	0.89[ASN][1000 genomes]
rs9515977	0.89[ASN][1000 genomes]
rs9515978	0.87[ASN][1000 genomes]
rs9515980	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523404	0.91[ASN][1000 genomes]
rs9523405	0.91[ASN][1000 genomes]
rs9523407	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9523408	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9523410	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523412	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523413	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9523417	0.97[ASN][1000 genomes]
rs9523418	0.94[ASN][1000 genomes]
rs9523424	0.87[ASN][1000 genomes]
rs9560849	0.81[ASN][1000 genomes]
rs9560850	0.81[ASN][1000 genomes]
rs9560851	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv524271	chr13:92419769-92501664	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv562720	chr13:92419769-92501664	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1036226	chr13:92421721-92501284	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1053048	chr13:92421721-92501558	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1053597	chr13:92421721-92502205	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92428800-92429400	Enhancers	Fetal Intestine Large	intestine
2	chr13:92429000-92429200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:92429000-92429200	Weak transcription	Brain Anterior Caudate	brain

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