Variant report

Variant	rs9523440
Chromosome Location	chr13:92519053-92519054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12865389	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1332092	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes]
rs1332093	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1332095	0.81[CHB][hapmap]
rs1505564	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1505565	0.82[CHB][hapmap]
rs1537026	0.88[ASN][1000 genomes]
rs1537027	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs168218	0.81[CHB][hapmap]
rs171060	0.81[CHB][hapmap]
rs1813966	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1847713	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1854970	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1854980	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[GIH][hapmap];0.88[TSI][hapmap]
rs1854986	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs189337	0.81[CHB][hapmap]
rs1999231	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2065193	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2174504	0.90[CHB][hapmap]
rs2352191	0.90[CHB][hapmap]
rs342697	0.90[CHB][hapmap]
rs342709	0.90[CHB][hapmap]
rs342711	0.81[CHB][hapmap]
rs342714	0.81[CHB][hapmap]
rs342715	0.81[CHB][hapmap]
rs342716	0.81[CHB][hapmap]
rs342717	0.81[CHB][hapmap]
rs342718	0.81[CHB][hapmap]
rs342719	0.81[CHB][hapmap]
rs345471	0.89[CHB][hapmap]
rs345477	0.81[CHB][hapmap]
rs345482	0.81[CHB][hapmap]
rs3783054	0.95[CHB][hapmap]
rs3864180	0.92[CEU][hapmap];0.95[CHB][hapmap]
rs4470023	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs4495989	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4771843	0.95[CHB][hapmap]
rs4771844	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs4773648	1.00[CHB][hapmap]
rs525661	0.81[CHB][hapmap]
rs7489587	0.87[EUR][1000 genomes]
rs7982606	0.90[CHB][hapmap]
rs7984514	0.90[CHB][hapmap]
rs7984987	0.90[CHB][hapmap]
rs7985482	0.90[CHB][hapmap]
rs7992519	0.90[CHB][hapmap]
rs7993839	0.90[CHB][hapmap]
rs7994873	0.90[CHB][hapmap]
rs8000830	0.90[CHB][hapmap]
rs9301750	0.94[CHB][hapmap]
rs9301753	0.87[EUR][1000 genomes]
rs9301754	0.95[CHB][hapmap];0.87[EUR][1000 genomes]
rs9515967	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs9515968	0.96[CEU][hapmap];0.90[CHB][hapmap];0.83[EUR][1000 genomes]
rs9515971	0.95[CHB][hapmap];0.88[GIH][hapmap]
rs9515974	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9515976	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9515977	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9515978	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9515980	0.95[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs9515981	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs9523402	0.81[CHB][hapmap]
rs9523404	0.94[CHB][hapmap]
rs9523406	0.89[CEU][hapmap];0.80[TSI][hapmap]
rs9523407	0.92[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes]
rs9523410	0.95[CHB][hapmap];0.81[GIH][hapmap]
rs9523412	0.85[CHB][hapmap]
rs9523417	0.86[EUR][1000 genomes]
rs9523418	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9523424	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9556124	0.90[CHB][hapmap]
rs9556128	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9560849	0.85[CHB][hapmap]
rs9560870	0.90[CHB][hapmap]
rs9560873	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv562721	chr13:92476602-92548841	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv983612	chr13:92492782-92519967	Enhancers	lncRNA	n/a	inside rSNPs	diseases
9	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv1041361	chr13:92495093-92519488	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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