Variant report

Variant	rs9523406
Chromosome Location	chr13:92415267-92415268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:92414642..92418617-chr13:92420339..92423769,4	K562	blood:
2	chr13:91999865..92002024-chr13:92412543..92415507,2	K562	blood:
3	chr13:92414833..92415387-chr21:46409975..46410728,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1332092	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1332093	0.81[EUR][1000 genomes]
rs1445396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1505564	0.82[EUR][1000 genomes]
rs1537027	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs1542158	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1813966	0.82[EUR][1000 genomes]
rs1847713	0.89[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs1854970	0.82[EUR][1000 genomes]
rs1854980	0.89[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs1854981	0.81[EUR][1000 genomes]
rs1854986	0.82[EUR][1000 genomes]
rs1999231	0.81[CEU][hapmap]
rs342698	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs342699	0.82[CHB][hapmap]
rs342700	0.82[CHB][hapmap]
rs342703	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs342705	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs3783054	0.82[TSI][hapmap]
rs3864180	0.88[CEU][hapmap]
rs4470023	0.96[CEU][hapmap];0.85[CHB][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs4495989	0.81[EUR][1000 genomes]
rs472095	0.82[CHB][hapmap]
rs4771844	0.92[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs481064	0.82[CHB][hapmap]
rs483826	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs505246	0.82[CHB][hapmap]
rs548544	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs7489587	0.85[EUR][1000 genomes]
rs7986386	1.00[CHB][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap]
rs7995950	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7999964	0.86[EUR][1000 genomes]
rs9301751	0.81[EUR][1000 genomes]
rs9301753	0.86[EUR][1000 genomes]
rs9301754	0.86[EUR][1000 genomes]
rs9515967	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs9515968	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs9515974	0.85[EUR][1000 genomes]
rs9515976	0.82[EUR][1000 genomes]
rs9515977	0.82[EUR][1000 genomes]
rs9515978	0.80[EUR][1000 genomes]
rs9515981	0.89[CEU][hapmap];0.81[TSI][hapmap]
rs9523407	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs9523413	0.81[EUR][1000 genomes]
rs9523417	0.84[EUR][1000 genomes]
rs9523418	0.85[EUR][1000 genomes]
rs9523424	0.89[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs9523440	0.89[CEU][hapmap];0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92383000-92419400	Weak transcription	Hela-S3	cervix
2	chr13:92414000-92417000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:92414800-92415600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:92415000-92416000	Enhancers	Fetal Intestine Large	intestine

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