Variant report
Variant | rs34549121 |
---|---|
Chromosome Location | chr15:78123986-78123987 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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rs_ID | r2[population] |
---|---|
rs11072674 | 0.82[ASN][1000 genomes] |
rs11072680 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs1123552 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11629621 | 0.82[ASN][1000 genomes] |
rs11631822 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11637937 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11852322 | 0.82[AMR][1000 genomes] |
rs12591307 | 0.82[ASN][1000 genomes] |
rs12595659 | 0.83[ASN][1000 genomes] |
rs12900865 | 0.81[ASN][1000 genomes] |
rs12901558 | 0.81[ASN][1000 genomes] |
rs12902298 | 0.82[ASN][1000 genomes] |
rs12910504 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12912080 | 0.82[AMR][1000 genomes] |
rs12912467 | 0.82[AMR][1000 genomes] |
rs12915515 | 0.81[ASN][1000 genomes] |
rs34709918 | 0.83[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs35020526 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs35575866 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs3935182 | 0.84[ASN][1000 genomes] |
rs3936093 | 0.93[ASN][1000 genomes] |
rs4255755 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4420498 | 0.81[ASN][1000 genomes] |
rs4442775 | 0.82[ASN][1000 genomes] |
rs4486846 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4509984 | 0.81[ASN][1000 genomes] |
rs4542627 | 0.81[ASN][1000 genomes] |
rs4587942 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4589520 | 0.81[ASN][1000 genomes] |
rs4595767 | 0.82[ASN][1000 genomes] |
rs4886526 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4886527 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4886531 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4886915 | 0.81[ASN][1000 genomes] |
rs4886918 | 0.92[ASN][1000 genomes] |
rs4886926 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs4886930 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4886932 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4886933 | 0.82[AMR][1000 genomes] |
rs4886939 | 0.96[ASN][1000 genomes] |
rs55726435 | 0.81[ASN][1000 genomes] |
rs61606062 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs62007851 | 0.82[ASN][1000 genomes] |
rs6495252 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6495253 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7164558 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7169661 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7176895 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7179211 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7182697 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7183989 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs8026203 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs8032021 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs8036045 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs8037968 | 0.81[ASN][1000 genomes] |
rs8039011 | 0.81[ASN][1000 genomes] |
rs8040443 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs8040813 | 0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040852 | chr15:77160237-78137541 | Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
2 | esv1806097 | chr15:77817889-78301377 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
3 | nsv529491 | chr15:77932659-78751516 | Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 80 gene(s) | inside rSNPs | diseases |
4 | nsv833062 | chr15:78035206-78220358 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
5 | nsv904421 | chr15:78041789-78129964 | Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv904424 | chr15:78059488-78158893 | Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | nsv471255 | chr15:78063585-78131097 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | nsv570171 | chr15:78064664-78131097 | Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
9 | nsv904425 | chr15:78064664-78153850 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
10 | esv1833316 | chr15:78081307-78328108 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
11 | nsv904426 | chr15:78090630-78264164 | Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:78119800-78126800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
2 | chr15:78120000-78124400 | Weak transcription | Fetal Brain Female | brain |
3 | chr15:78122200-78125600 | Enhancers | Fetal Stomach | stomach |
4 | chr15:78122800-78124200 | Weak transcription | Fetal Lung | lung |
5 | chr15:78123000-78124400 | Weak transcription | Fetal Muscle Trunk | muscle |
6 | chr15:78123200-78124800 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
7 | chr15:78123400-78124400 | Weak transcription | Fetal Thymus | thymus |
8 | chr15:78123600-78128000 | Weak transcription | Fetal Brain Male | brain |